| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1607 |
|---|
| Symbol | |
|---|
| ID | 4038410 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 1733100 |
|---|
| End bp | 1733825 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637976991 |
|---|
| Product | LrgB-like protein |
|---|
| Protein accession | YP_583759 |
|---|
| Protein GI | 94310549 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1346] Putative effector of murein hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.884781 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGCGC TCTCCGGTTT GCATCTGGCC CCGTCCGTGG CGTCGTTTCT CTGCCTGGCA
TGGACCGTCG CGCTGTACTT CGCGGTCAAG CCGCTGTACC AGCGCCTGCC ACGGATCTGG
CTGTCGCCGG CGATCGTCGT GCCGGCACTG ACCATCCCGC TGCTGCTGAT CACCGGTATT
CCCTACGCCG AGTACGTTGC CGATACCCGG TGGATGGTCT GGCTGCTCGG ACCGGCCACG
ATCGCGTTCG CCGTGCCGAT CTATGAGCAC CGCGAGATCG TGCGCCGTCA CTGGATCGCG
CTGGCACTTG GCGTGATCGC CGGGATGCTG GTGGCGATGC TCAGCGCGCG GCTGCTGGCC
GAGGCATTTC ATTTCAGCAG CGAGGTGTCG AGCAGCCTGA TGGCGCGTTC CGTGTCCACG
CCGTTCGCTG TGGCCGTGGT CGCGCATACG GGCGGGTCCG CCGAACTGGT GTCGCTGTTC
ACCGTAATGA CCGGACTTGC CGGCATGATC GTCGGGGACA CGGTGCTCGG CCTGCTGCGA
CTGCGCTCGC CCGTGGCGCA GGGTGCATCG CTTGGCACCG CCGCGCATGG TTTCGGCACC
GCGCGCGCCC GGCAGCGTCA CGCCGAAGAG GGTGTGGTCG CCAGCCTGAC GATGGTGCTG
GCCGGCGTGC TGATGGTCAT CGCCGGCCCA ACCTTGACGG GCTGGGTCAC GGCATTGGTG
GGCTGA
|
|---|
| Protein sequence | MPALSGLHLA PSVASFLCLA WTVALYFAVK PLYQRLPRIW LSPAIVVPAL TIPLLLITGI
PYAEYVADTR WMVWLLGPAT IAFAVPIYEH REIVRRHWIA LALGVIAGML VAMLSARLLA
EAFHFSSEVS SSLMARSVST PFAVAVVAHT GGSAELVSLF TVMTGLAGMI VGDTVLGLLR
LRSPVAQGAS LGTAAHGFGT ARARQRHAEE GVVASLTMVL AGVLMVIAGP TLTGWVTALV
G
|
|---|
| |