| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1574 |
|---|
| Symbol | ldcA |
|---|
| ID | 4038377 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 1693396 |
|---|
| End bp | 1694316 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637976958 |
|---|
| Product | L,D-carboxypeptidase A |
|---|
| Protein accession | YP_583726 |
|---|
| Protein GI | 94310516 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1619] Uncharacterized proteins, homologs of microcin C7 resistance protein MccF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.844066 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGC CCACCGAAGT CCGTCTCATC GCCTCATCCG GCTACCCTCA CGACGTTGCC
ATTGCCGCCC GCGGCTGTGC CTGGCTCAAG CACCACGGCT ACCACGTCAA CAATCCCGAT
GTGCTCGCGC GCCGCTATCT GCGATTCGGC GGTACGGATG CGGAGCGGTT GGCCGATCTC
CATGCCATCG GCACAGGTCC CGCTCGGGAG CTGACGCTGG CGGTGCGCGG CGGGTACGGC
CTGGGCCGAC TGCTCGATCG CATCGAGTTC GGGCGCATCG CGGAGCAGGC CAGCGCAAGC
GGCACGCCGA TCGTCGGTCA CAGCGATTTC ACCGCGTTCC AGCTGGCCTA TCTGGCCAAG
GCTGGCGGGG TGTCGTTCGC AGGGCCGATG CTGCTCGCGG ATTTCGGCGA GGAGCACGTC
GATTCGTTCA TGTGGCGGCA TTTCGAGGGC ATCCTGCGCG CCCCGGTCCA CGACATCGAG
GTCGAGGCGG CCCAGGTGGC CGCGCCGGCA ACCGTGGAAG GCACGCTCTG GGGCGGCAAT
CTGGCCATGC TGTGCACGCT GCTGGGCACG CCGTACATGC CGAACATCGA CGGTGGCATT
CTGTTCCTGG AAGACATCAA CGAGCCGCCG TACCGCGTGG AGCGGATGTT GCTCCAGTTG
CTGCACGCAG GGGTGCTGGC CCGGCAACAG GCCATCGTGC TGGGCGACTT CTCGAATTAC
CGCACCACCG ACTACGACAA TGGCTACAAC ATGGATGCCG TATTCGACTA TGTGCGCGAA
CAGTTGCGTA TTCCGGTGCT CACGGGCCTG CCGTTCGGCC ACTGCCCGCG CAAGCTGACT
TTGCCGGTGG GCGGAAATGC GCGGCTGACG GCACGTGCCG ACGGTTTCGT GCTGTCGCTG
TCGGGTTATC CGACGTTGTA G
|
|---|
| Protein sequence | MSQPTEVRLI ASSGYPHDVA IAARGCAWLK HHGYHVNNPD VLARRYLRFG GTDAERLADL
HAIGTGPARE LTLAVRGGYG LGRLLDRIEF GRIAEQASAS GTPIVGHSDF TAFQLAYLAK
AGGVSFAGPM LLADFGEEHV DSFMWRHFEG ILRAPVHDIE VEAAQVAAPA TVEGTLWGGN
LAMLCTLLGT PYMPNIDGGI LFLEDINEPP YRVERMLLQL LHAGVLARQQ AIVLGDFSNY
RTTDYDNGYN MDAVFDYVRE QLRIPVLTGL PFGHCPRKLT LPVGGNARLT ARADGFVLSL
SGYPTL
|
|---|
| |