Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_1550 |
Symbol | |
ID | 4038353 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | + |
Start bp | 1672583 |
End bp | 1673659 |
Gene Length | 1077 bp |
Protein Length | 358 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637976934 |
Product | type II secretion system protein E |
Protein accession | YP_583702 |
Protein GI | 94310492 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | [TIGR02782] P-type conjugative transfer ATPase TrbB |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.00260971 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.700306 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGCCC GAATCTCCAT TGAAGGGCAG TCCATGAGTG CCACGTCGCT CGACCGCCGC ATCCAGATGC TGCGCACGGC GATGGGGCCG CTGATCGCCG CCGCGCTCGA AGACCCGGAC GTGGTGGAGG TGATGCTGAA TCCCGATCGC ACCCTTTGGG TGGATCGGCT TTCCAGTGGG CGCGCGCCGA TGGGCGTGGA ACTGCCCGAG GCGGACGGCG AGCGAATCAT CCGCCTCGTG GCCGCCCACG TTGGCGCGGA AGTCCATCGC GGCCAGCCGC TGCTGTCCGC CGAGTTGCCC GAGACGGGCG AACGCTTCGA GGGCATTTTG CCGCCGGCAG CGCCGGGGCC GGCCTTCGCG CTGCGCAAGC GGGCCATCGG CGTGATTCCG CTGGAGCGCT ACGTCGTGGA GGGAATGATG ACCGCCGCAC AGGCGGGCTT TCTCGTTCGC GCCGTACGCG AGCGGCAGAA CGTGCTGATC GCCGGCGCCA CCAGCAGCGG CAAGACGACC TTGGCGAACG CGCTGCTGGC CGAGATCGCC GCCACCGGCG ACCGCGTGCT GGTGCTCGAA GACACTGTGG AACTGCAATG CGCGGCCCGC GACCACGTTC CGCTGCGCAC ACGCGCGGGC GTGGTGTCCA TGACGGAGCT GGTGCGCTCG TCCATGCGAC TGCGGCCCGA TCGTGTCGTC GTCGGCGAGG TGCGCGGCGC CGAGGCGCTG GATCTCATCA AGGTCTGGGG CACGGGCCAC CCCGGCGGCA TCGCCACGAT CCACGCCGGC TCCGCGCTCG GCGCGCTGCT GCGCCTGGAG CAACTGATTC TCGAAGTGGC GGTGAACCCG CCCCGCGCGC TGATCGCGGA AGCGGTCAAC GTGGTGATCC ACATCGCCGG GCGCGGGCGC AAACGCCGCA TCGAGAGCAT CGCCCGCGTC GTCGGCTTCG ACGGCGTGGG CTACAGGCTG GTGGATTGGG AGGCGGATGC ACTGGACACG CCGTTTCCCG AGCTGCCGCC GCTTCCCGAT GCCGCACCCG CTGCGGCGAC TTTCCCATCC CCTGACTCAC TTGGAGAACT GCCATGA
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Protein sequence | MSARISIEGQ SMSATSLDRR IQMLRTAMGP LIAAALEDPD VVEVMLNPDR TLWVDRLSSG RAPMGVELPE ADGERIIRLV AAHVGAEVHR GQPLLSAELP ETGERFEGIL PPAAPGPAFA LRKRAIGVIP LERYVVEGMM TAAQAGFLVR AVRERQNVLI AGATSSGKTT LANALLAEIA ATGDRVLVLE DTVELQCAAR DHVPLRTRAG VVSMTELVRS SMRLRPDRVV VGEVRGAEAL DLIKVWGTGH PGGIATIHAG SALGALLRLE QLILEVAVNP PRALIAEAVN VVIHIAGRGR KRRIESIARV VGFDGVGYRL VDWEADALDT PFPELPPLPD AAPAAATFPS PDSLGELP
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