| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1539 |
|---|
| Symbol | |
|---|
| ID | 4038342 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 1659525 |
|---|
| End bp | 1660667 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637976923 |
|---|
| Product | hydrogenase expression/formation protein HypD |
|---|
| Protein accession | YP_583691 |
|---|
| Protein GI | 94310481 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0409] Hydrogenase maturation factor |
|---|
| TIGRFAM ID | [TIGR00075] hydrogenase expression/formation protein HypD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.000400183 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.116221 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATACG TGGACGAATT CCGGGACGGC GAGCTGGCCC GTACCCTGGC GGCGAAGATC
GCCCGCGACG CCGACTCCGG GCGCAGCTAC AGTTTCATGG AGTTCTGCGG CGGCCACACC
CACGCCATCT CCCGCTACGG TGTCAGCGAT CTGTTGCCCG CCAACGTGCG CATGATCCAC
GGCCCCGGCT GCCCGGTGTG CGTGCTGCCC ATCGGCCGCA TCGATCTCGC CATCAAGCTC
GCGTTGGAGC GTGGTGTGAT CCTCTGCTCC TATGGCGACA CGCTGCGCAT CCCCGCCTCC
GAGAGCCTGT CGCTGCTCAA GGCCAAGGCC CGCGGTGCGG ACATCCGCAT GGTCTACTCG
GCGGCCGACG CGCTGGCCAT CGCCCAGCAG AATCCCCAGC GCGAAGTGGT GTTTTTCGCC
ATCGGCTTCG AGACCACCAC GCCGCCCACC GCGCTGGTGA TCAAGCAGGC CGAGGCGGCC
CGCGTCACCA ACTTCAGTGT GCTGTGCAAC CACGTGCTGA CGCCTTCGGC CATCATCACC
ATCCTCGAGT CGCCGGAGGT GCGCAAGCTG GGTACCGTGC CGCTGGACGG CTTCGTCGGC
CCCGCCCATG TCAGCACCGT GATCGGCAGT CGGCCCTACG AATTCTTCGC CGAGGAGTAC
CGCAAGCCGG TGGTGATCGC CGGCTTCGAG CCGCTGGACG TGATGCAGGC CATCCTCATG
CTGGTGACGC AGGTCAACGA GGGCAGAGCC GAGGTGGAGA ATGAATTCAC TCGCGCCGTC
ACCCGAGACG GCAACCAGAA GGCCCAGGCC TTGGTGTCGG AAGTCTTCGA GCTGCGCTGC
TCCTTCGAAT GGCGCGGCCT GGGCGAGGTG CCCTACAGCG CCCTGCGCAT CCGCGCCAGC
TACCGCCTGT TCGACGCCGA GGCCCGCTTC GGCCTCGCCT ACCGGCCGGT GCCCGACAAC
AAGGCCTGCG AATGCGGCGC CATCCTGCGC GGCGTGAAGA AGCCCACCGA CTGCAAGCTC
TTCGCCACCG CGTGCACGCC GGAGAATCCG ATGGGCTCCT GCATGGTGTC GAGCGAAGGG
GCGTGCGCGG CGCATTACAG CTACGGGCGG TTCAAGGACA TCGAAGTGGT GGTGGCAGCT
TGA
|
|---|
| Protein sequence | MKYVDEFRDG ELARTLAAKI ARDADSGRSY SFMEFCGGHT HAISRYGVSD LLPANVRMIH
GPGCPVCVLP IGRIDLAIKL ALERGVILCS YGDTLRIPAS ESLSLLKAKA RGADIRMVYS
AADALAIAQQ NPQREVVFFA IGFETTTPPT ALVIKQAEAA RVTNFSVLCN HVLTPSAIIT
ILESPEVRKL GTVPLDGFVG PAHVSTVIGS RPYEFFAEEY RKPVVIAGFE PLDVMQAILM
LVTQVNEGRA EVENEFTRAV TRDGNQKAQA LVSEVFELRC SFEWRGLGEV PYSALRIRAS
YRLFDAEARF GLAYRPVPDN KACECGAILR GVKKPTDCKL FATACTPENP MGSCMVSSEG
ACAAHYSYGR FKDIEVVVAA
|
|---|
| |