| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1525 |
|---|
| Symbol | |
|---|
| ID | 4038328 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 1647176 |
|---|
| End bp | 1648642 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637976909 |
|---|
| Product | nickel-dependent hydrogenase, large subunit |
|---|
| Protein accession | YP_583677 |
|---|
| Protein GI | 94310467 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3259] Coenzyme F420-reducing hydrogenase, alpha subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00000894187 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00486844 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGAA AACTGGTTAT CGATCCCGTG ACCCGTATCG AGGGTCACGG CAAGGTCACG
GTGCACCTGG ATGACGACAA TAACGTCATC GACGCCAAGC TGCACGTCGT GGAATTCCGG
GGTTTCGAAA AGTTCATCCA GGGCCATCCC TACTGGGAGG CGCCGATGTT TCTGCAGCGT
ATCTGCGGCA TCTGCTTTGT CAGCCACCAC CTGTGCGGGG CCAAGGCGCT GGACGACATG
GTCGGTGTCG GCCTGAAATC CGGCATCGAT GTCACACCGG CCGCGGAGAA AATGCGCCGC
CTCGGCCACT ACGCGCAGAT GCTCCAATCC CATACGACGG CCTATTTCTA TCTGATCGTG
CCGGAGATGC TGTTCGGGAT GGACGCGCCG CCTGAGCAGC GCAACGTGCT CGGCCTGATT
GAGGCCGATC CCGAGCTGGT GAAAAGAGTC GTGATGCTGC GCAAATGGGG CCAGGAAGTC
ATCAAGGTGG TGTTCGGCAA AAAAATGCAC GGCATCAACT CGGTGCCCGG TGGCGTCAAC
AAGAATCTGA GCATTGCCGA GCGCGACCGT TTGCTGAACG GGGAAGAAGG CCTTCTGGCG
ATGGATCAGG TCATCGACTT CGCACAGGAT GGACTGCGCC TGTTCTACGA CTTCCATGAA
AAGCACCGGG CGCAGGTGGA CAGTTTCGCC GACGTACCCG CACTCAACAT GTCCCTGGTC
GATGCCGACG GCAATGTGGA CTACTACCAC GGCAAGCTGC GTATCGTCGA CGACGACAAG
AACATCGTCC GCGAACTCGA TTATCACGAC TACCTGGATC ACTTCAGCGA AGCGGTCGAG
GAGTGGAGCT ACATGAAGTT CCCTTACCTC AAAGACCTGG GAAGGGAAAA GGGTTCGGTG
CGCGTCGGGC CGCTGGGCCG CATGAACGTG ACGAAGACGC TCTCGACGCC GCTCGCCCAG
GAGGCGCTGG AACGCTTCCA TGCCTACACG AAGGGGCGGG CGAACAACAT GACCCTGCAC
ACCAACTGGG CACGGGCCAT AGAAATCCTC CACGCCGCGG AGGTCATCAG GGAATTGCTG
CACGACCCGG ACCTGCAGAA GGATCAGCTG GTGTTGACGC CGCCCGCCGG CGCGTGGACC
GGCGAAGGGG TCGGTGTGGT CGAAGCGCCA CGTGGAACCT TGCTCCACCA TTACCGTGCC
GACGAGCGCG GCAATATCAC CTTCGCCAAC CTGGTCGTCG CCACCACTCA AAACAACCAG
GTCATGAATC GCACGGTGCG CAGCGTCGCC GAGGACTACC TGGGCGGGCA CGGCGAGATT
ACCGAGGGCA TGATGAACGC CATCGAGGTG GGCATACGCG CATACGATCC TTGCCTGAGC
TGCGCCACCC ACGCCCTGGG GCAGATGCCG CTGGTGGTTT CGGTCTATGA CGCGGCGGGG
GGGCTGATCG ATGAACGCAC CCGCTGA
|
|---|
| Protein sequence | MSRKLVIDPV TRIEGHGKVT VHLDDDNNVI DAKLHVVEFR GFEKFIQGHP YWEAPMFLQR
ICGICFVSHH LCGAKALDDM VGVGLKSGID VTPAAEKMRR LGHYAQMLQS HTTAYFYLIV
PEMLFGMDAP PEQRNVLGLI EADPELVKRV VMLRKWGQEV IKVVFGKKMH GINSVPGGVN
KNLSIAERDR LLNGEEGLLA MDQVIDFAQD GLRLFYDFHE KHRAQVDSFA DVPALNMSLV
DADGNVDYYH GKLRIVDDDK NIVRELDYHD YLDHFSEAVE EWSYMKFPYL KDLGREKGSV
RVGPLGRMNV TKTLSTPLAQ EALERFHAYT KGRANNMTLH TNWARAIEIL HAAEVIRELL
HDPDLQKDQL VLTPPAGAWT GEGVGVVEAP RGTLLHHYRA DERGNITFAN LVVATTQNNQ
VMNRTVRSVA EDYLGGHGEI TEGMMNAIEV GIRAYDPCLS CATHALGQMP LVVSVYDAAG
GLIDERTR
|
|---|
| |