| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1501 |
|---|
| Symbol | rbcL |
|---|
| ID | 4038304 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 1620446 |
|---|
| End bp | 1621867 |
|---|
| Gene Length | 1422 bp |
|---|
| Protein Length | 473 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637976885 |
|---|
| Product | ribulose bisophosphate carboxylase |
|---|
| Protein accession | YP_583653 |
|---|
| Protein GI | 94310443 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1850] Ribulose 1,5-bisphosphate carboxylase, large subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0011462 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0288871 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCAA AGACATACAA CGCTGGCGTG AAGGAGTATC GCCAAACCTA CTGGACCCCG
GAATACACTC CGAAGGACAC TGACCTTCTC GCCTGCTTCA AGGTCACCCC GCAGCCGGGC
GTGGCCCGCG AGGAAGTCGC CGCCGCCGTG GCCGCCGAGT CGTCGACCGG CACCTGGACC
ACGGTGTGGA CCGACCTGCT GACCGACCTC GACTACTACA AGGGCCGTGC CTACCGGATC
GAGGACGTGC CGGGAGATGA CACCTGCTTC TACGCCTTCG TGGCCTATCC GATCGACCTG
TTCGAAGAGG GTTCCATCGT CAACGTGCTG ACCTCCCTGG TTGGCAACGT CTTCGGCTTC
AAGGCCCTGC GTGCCCTGCG CCTCGAGGAC GTGCGCTTCC CCATCGCCTA CGTCATGACC
TGCGGCGGCC CGCCGCACGG TATCCAGGTC GAGCGCGACA TCATGAACAA ATACGGCCGG
CCGCTGCTGG GCTGCACCAT CAAGCCGAAG CTCGGCCTGT CGGCCAAGAA CTACGGCCGC
GCCGTCTATG AGTGCCTGCG TGGCGGCCTC GACTTCACCA AGGACGACGA GAACGTCAAC
AGCCAGCCCT TCATGCGCTG GAAGCAGCGT TTCGACTTCG TCCAGGAAGC GACCGAGAAG
GCGCAGCGCG AAACCGGCGA ACGCAAGGGC CACTACCTGA ACGTCACCGC GCCGACGCCG
GAAGAGATGT ACAAGCGCGC CGAGTACGCC AAGGAAATCG GCGCGCCGAT CATCATGCAC
GACTACCTGA CCGGCGGCTT CTGCGCCAAT ACCGGCCTGG CCAACTGGTG CCGCGACAAC
GGCATGCTGC TGCACATCCA CCGCGCCATG CACGCCGTGC TCGACCGCAA CCCGCACCAC
GGCATTCACT TCCGCGTGCT GACCAAGTGC CTGCGCCTGT CCGGCGGCGA CCACCTGCAC
TCGGGCACCG TCGTCGGCAA GCTGGAAGGC GACCGCGACG CGACGCTCGG CTGGATCGAC
ATCATGCGCG ACGACTTCAT CAAGGAAGAC CGCAGCCGCG GCATCATGTT CGACCAGGAC
TTCGGCTCCA TGCCCGGCGT CATGCCGGTC GCCTCCGGCG GCATCCACGT CTGGCACATG
CCTGCCTTGG TCACCATCTT CGGCGACGAC TCGGTGCTGC AGTTCGGTGG CGGTACGCTC
GGCCACCCCT GGGGCAACGC CGCCGGCGCC GCCGCCAACC GCGTCGCGCT GGAAGCCTGC
GTCGAGGCGC GCAACAAGGG CGTCGCCGTC GAGAAGGAGG GCAAGAGCAT CCTGACCGAG
GCTGCCACGC ACTCGCCCGA ACTGAAGATC GCCATGGAAA CGTGGAAAGA GATCAAGTTC
GAGTTCGACA CCGTCGACAA GCTGGACGTC GCCCACAAGT AA
|
|---|
| Protein sequence | MAAKTYNAGV KEYRQTYWTP EYTPKDTDLL ACFKVTPQPG VAREEVAAAV AAESSTGTWT
TVWTDLLTDL DYYKGRAYRI EDVPGDDTCF YAFVAYPIDL FEEGSIVNVL TSLVGNVFGF
KALRALRLED VRFPIAYVMT CGGPPHGIQV ERDIMNKYGR PLLGCTIKPK LGLSAKNYGR
AVYECLRGGL DFTKDDENVN SQPFMRWKQR FDFVQEATEK AQRETGERKG HYLNVTAPTP
EEMYKRAEYA KEIGAPIIMH DYLTGGFCAN TGLANWCRDN GMLLHIHRAM HAVLDRNPHH
GIHFRVLTKC LRLSGGDHLH SGTVVGKLEG DRDATLGWID IMRDDFIKED RSRGIMFDQD
FGSMPGVMPV ASGGIHVWHM PALVTIFGDD SVLQFGGGTL GHPWGNAAGA AANRVALEAC
VEARNKGVAV EKEGKSILTE AATHSPELKI AMETWKEIKF EFDTVDKLDV AHK
|
|---|
| |