| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1465 |
|---|
| Symbol | |
|---|
| ID | 4038268 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 1585594 |
|---|
| End bp | 1586850 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637976849 |
|---|
| Product | phage integrase |
|---|
| Protein accession | YP_583617 |
|---|
| Protein GI | 94310407 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0582] Integrase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0137829 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.595385 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGACCG ACACAGCACT GCGCAATCTG AAGCCTAAGT CATTGACTTA TAAGGTTTCT
GACCGGGACG GGATGTACGT GACGGTATCG CCCGCAAATA CCGTCACCTT CCGCTACGAC
TACCGTCTCA ACGGCCGCCG CGAGACCTTG ACCATCGGCC GCTACGGTGC AGGCGGCATT
TCGCTGGCAA TGGCGCGTGA ACTGCTTCTG GAGGCGCGCA AGGCCGTTCT CCAGGGCATA
TCGCCCGCGC TGGAGAAGCA ACGCGACAAG CGCCGGGTTC GCGCCATCAA GACCTTCGGC
GCGGCGATGG AGACGTATCT TGCCCACACG AGATGGGCCG ACAGCACCCG CGCCGTGCGC
AAGCACATCA TCGACCGGGA CATCCTGCCG GTTTTCCAGA ATCGGCTGCT GACCGAGATC
CAGGCCGAAG ACCTTCGGAT TCTGTGCAAC AAGGTCAAGG AGCGCGGGGC ACCAGCCACC
GCGGTGCAGA TCCGGGACAT CGTGAAGCAG GTCTACGTCT ACGCCATCGC CCACGGTGAG
AAGGTGGTCA ACCCCGCCGA CAGCGTGGGG CCGTCCTCGA TCGCCACCTT CGTGCCGAAG
GATCGTGCCC TCTCGCCGCT GGAAATCCGT TTGATGGTGC AGCAGTTGGA GACGGTGGCG
ACCTATCCGA CCATCAAGCT GGCGCTGCGC CTGATCCTGC TGACGCTGGT GCGCAAGAGC
GAACTGATCC AGGCCACTTG GGATGAAGTC GATTTCGAGC GCAAGACCTG GACGATTCCG
AAGCAGCGGA TGAAGGGTCG CAATCCGCAC GTGGTCTATC TGTCGCGCCA GGCGCTCGAC
ATCTTCGTGA CGCTGCACGC CTGTGCGGCT GGCTCAAAGT TCGTTTTCCC TTCTCGCTAC
GATGCAGAGC GGTGCATGTC CAATGCGACC TTGAATCGCA TCACGATGCT GGTGGCAGAA
GGTGCCAAGG CCAAAGATCT GCCGCTACAG CCGTTCACCG TCCACGATCT GCGCCGCACC
GGCTCGACGC TGCTGAACGA AATCGGCTTC AACCGCGACT GGATTGAGAA GTGCCTGGCG
CACGAGGAGG GGCGTTCCTC GCGTTCGGTC TACAACAAGG CCGAATACGC CGAGCAGCGG
CGCCACATGC TGCAAGAGTG GGCCAACCTG GTCGATGCCT GGGGTGGCGG ACAGACTTAC
GTGCCGAAGC TGATGCCGGA GAACGTGGTC GTGCCGGCGT TGAGCGCGAT CGCGTAG
|
|---|
| Protein sequence | MLTDTALRNL KPKSLTYKVS DRDGMYVTVS PANTVTFRYD YRLNGRRETL TIGRYGAGGI
SLAMARELLL EARKAVLQGI SPALEKQRDK RRVRAIKTFG AAMETYLAHT RWADSTRAVR
KHIIDRDILP VFQNRLLTEI QAEDLRILCN KVKERGAPAT AVQIRDIVKQ VYVYAIAHGE
KVVNPADSVG PSSIATFVPK DRALSPLEIR LMVQQLETVA TYPTIKLALR LILLTLVRKS
ELIQATWDEV DFERKTWTIP KQRMKGRNPH VVYLSRQALD IFVTLHACAA GSKFVFPSRY
DAERCMSNAT LNRITMLVAE GAKAKDLPLQ PFTVHDLRRT GSTLLNEIGF NRDWIEKCLA
HEEGRSSRSV YNKAEYAEQR RHMLQEWANL VDAWGGGQTY VPKLMPENVV VPALSAIA
|
|---|
| |