| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1439 |
|---|
| Symbol | |
|---|
| ID | 4038242 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 1559846 |
|---|
| End bp | 1560616 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637976823 |
|---|
| Product | undecaprenyl pyrophosphate synthetase |
|---|
| Protein accession | YP_583591 |
|---|
| Protein GI | 94310381 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0020] Undecaprenyl pyrophosphate synthase |
|---|
| TIGRFAM ID | [TIGR00055] undecaprenyl diphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000108865 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCACA TCAGTTCGAC GCTAGGCGTT CCCGATACCA CCTATGTGCC TCGGCACGTT
GCCATCATCA TGGATGGCAA CGGTCGCTGG GCGACGCAGC GTCATCTACC CCGTGTGGCC
GGCCACAACC GTGGCCTGGA CGCAGTGCGC GAGATCGTGC AGGCGTGCGC CGCTCGTGGC
GTGCAGTACC TGACGCTGTT TGCATTCAGT TCCGAGAATT GGCGCAGGCC CGCCGACGAG
GTGTCATTCC TGATGCGTCT GTTCATGACC GCCTTGCGTC GCGAAGTGGT CAGGATGCAC
GCCAACAATA TTCGCCTGCG TGTGGTCGGC GATCTCAGCC GGTTCAGCCC GCGCATCCAG
CAGGCGATCA AGGATGCCGA GGCGCGCACG GAAGGCAATA CGGGCCTGAC CGTGACGATC
GCCGCCAACT ATGGCGGCCG CTGGGACCTG CTCCAGGCGA TGCGCAAGAT GCTGGCGCGT
TCGCCGTTGC TCGATTCGGA CGCGATCGAC GAGTCCGTTC TGGCGCCGCA TCTGGCTATG
GCCTACGCGC CCGAGCCGGA CCTGTTCATC CGCACCGGCG GGGAGCAGCG CATCAGCAAC
TTCCTGCTCT GGCAGCTTGC CTACACGGAG TTGTACTTCA CCGAAACGTT CTGGCCGGAT
TTTGATGCCG CCGAGCTGGA CAAGGCCTTT GCCTCGTACC GTCAGCGCGA GCGGCGCTTC
GGACGGACCA GCGCGCAGCT GGTGGCGCCA GGCCTGTCCG GTACAGCCTG A
|
|---|
| Protein sequence | MQHISSTLGV PDTTYVPRHV AIIMDGNGRW ATQRHLPRVA GHNRGLDAVR EIVQACAARG
VQYLTLFAFS SENWRRPADE VSFLMRLFMT ALRREVVRMH ANNIRLRVVG DLSRFSPRIQ
QAIKDAEART EGNTGLTVTI AANYGGRWDL LQAMRKMLAR SPLLDSDAID ESVLAPHLAM
AYAPEPDLFI RTGGEQRISN FLLWQLAYTE LYFTETFWPD FDAAELDKAF ASYRQRERRF
GRTSAQLVAP GLSGTA
|
|---|
| |