Gene Rmet_1424 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_1424 
Symbol 
ID4038227 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp1537892 
End bp1539124 
Gene Length1233 bp 
Protein Length410 aa 
Translation table11 
GC content68% 
IMG OID637976808 
Productsuccinyldiaminopimelate transaminase 
Protein accessionYP_583576 
Protein GI94310366 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0436] Aspartate/tyrosine/aromatic aminotransferase 
TIGRFAM ID[TIGR03538] succinyldiaminopimelate transaminase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000365494 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0284066 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGGGTT TCAACCGCCC CGCCGCTGCC ACCGTGAATC CGCGCCTCGA CCTGCTCCAA 
ACCTATCCTT TCGAGAAACT GCGCGCGCTG GTGGCCGATG TGAAACCGGC CGCCGTCCCG
CCAATCAGCT TCGGCATCGG CGAACCCAAG CACCCCACTC CGGCCTTCAT CAAGGAAGCG
ATGACCGCGT CGCTCGGCGG CCTGGCCAAC TACCCGAGCA CCGCCGGCAG CGACGCGCTG
CGCGCGTGCA TCGCGGGCTG GCTCGAACGC CGCTACAACC TGCCGAAGGT CGACGCCGCC
ACCGAGGTGC TGCCCGTCAC CGGTTCGCGC GAGGCACTGT TCGCGTTCGC GCAGACCGTG
ATCGACAGCA GCAAGCCCAA CCCGCTGGTG CTCTGCCCGA ACCCGTTCTA CCAGATCTAT
GAAGGCGCAG CCCTTCTGGC CGGCGCCCGT CCGGTGTTCG CCAACAGCGA TCCGGCGCGC
AACTTCGCGC CGGCGTTCGA CCAGATCGGC GCCGATGTGT GGCCGCACGT GCAACTGCTG
TACGTCTGCT CGCCGGGTAA CCCGACCGGC GCGGTGCTGT CGCTCGAAGA CTGGAAGCAG
CTTTTCGAAT TGTCCGACCG CTATGGCTTC GTGATTGCCT CCGACGAGTG CTACTCGGAG
ATCTACTTCG ACGAAGCAAA GCCGCCGCTC GGCGCGCTCG AAGCGGCCCA CAAGCTTGGC
CGGGGCCTGG AACGGCTGGT GATGTTCTCA AGCCTGTCGA AGCGCTCGAA CGTGCCGGGC
CTGCGCTCGG GCTTCGTCGC CGGCGACCCC GAGATCCTGA AGAAATTCCT GCTCTACCGC
ACCTACCACG GCGCCGCGAT GAACCCGGCC GTGCAGGCCG CCAGCGCCGC GGCGTGGGGC
GACGAGGCGC ACGTGCGCGA GAACCGCGCG GCCTATGTGC GCAAATTCGC CGAGGTCACG
CCGATGCTGG CAGGGGTGCT CGACGTGGCC CTGCCCGATG CGGCGTTCTA CCTGTGGGCC
GATGTCTCGC GCACTGGTCT GTCGGACACC GAGTTCGCCG TGCGGCTGCT GGCCGAACAG
AACCTCACGG TGCTGCCCGG CAGCTACCTG GCCCGCGACG CCCACGGCGT GAATCCCGGC
GCGAACCGGG TCCGCATGGC GCTGGTGGCC ACCCCGGACG AATGCCTCGA AGGCGCACGC
CGGATTGTCG AATTCTGCAA GTCGCTGGGC TGA
 
Protein sequence
MLGFNRPAAA TVNPRLDLLQ TYPFEKLRAL VADVKPAAVP PISFGIGEPK HPTPAFIKEA 
MTASLGGLAN YPSTAGSDAL RACIAGWLER RYNLPKVDAA TEVLPVTGSR EALFAFAQTV
IDSSKPNPLV LCPNPFYQIY EGAALLAGAR PVFANSDPAR NFAPAFDQIG ADVWPHVQLL
YVCSPGNPTG AVLSLEDWKQ LFELSDRYGF VIASDECYSE IYFDEAKPPL GALEAAHKLG
RGLERLVMFS SLSKRSNVPG LRSGFVAGDP EILKKFLLYR TYHGAAMNPA VQAASAAAWG
DEAHVRENRA AYVRKFAEVT PMLAGVLDVA LPDAAFYLWA DVSRTGLSDT EFAVRLLAEQ
NLTVLPGSYL ARDAHGVNPG ANRVRMALVA TPDECLEGAR RIVEFCKSLG