Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_1424 |
Symbol | |
ID | 4038227 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | - |
Start bp | 1537892 |
End bp | 1539124 |
Gene Length | 1233 bp |
Protein Length | 410 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637976808 |
Product | succinyldiaminopimelate transaminase |
Protein accession | YP_583576 |
Protein GI | 94310366 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
TIGRFAM ID | [TIGR03538] succinyldiaminopimelate transaminase |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.000365494 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0284066 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGGGTT TCAACCGCCC CGCCGCTGCC ACCGTGAATC CGCGCCTCGA CCTGCTCCAA ACCTATCCTT TCGAGAAACT GCGCGCGCTG GTGGCCGATG TGAAACCGGC CGCCGTCCCG CCAATCAGCT TCGGCATCGG CGAACCCAAG CACCCCACTC CGGCCTTCAT CAAGGAAGCG ATGACCGCGT CGCTCGGCGG CCTGGCCAAC TACCCGAGCA CCGCCGGCAG CGACGCGCTG CGCGCGTGCA TCGCGGGCTG GCTCGAACGC CGCTACAACC TGCCGAAGGT CGACGCCGCC ACCGAGGTGC TGCCCGTCAC CGGTTCGCGC GAGGCACTGT TCGCGTTCGC GCAGACCGTG ATCGACAGCA GCAAGCCCAA CCCGCTGGTG CTCTGCCCGA ACCCGTTCTA CCAGATCTAT GAAGGCGCAG CCCTTCTGGC CGGCGCCCGT CCGGTGTTCG CCAACAGCGA TCCGGCGCGC AACTTCGCGC CGGCGTTCGA CCAGATCGGC GCCGATGTGT GGCCGCACGT GCAACTGCTG TACGTCTGCT CGCCGGGTAA CCCGACCGGC GCGGTGCTGT CGCTCGAAGA CTGGAAGCAG CTTTTCGAAT TGTCCGACCG CTATGGCTTC GTGATTGCCT CCGACGAGTG CTACTCGGAG ATCTACTTCG ACGAAGCAAA GCCGCCGCTC GGCGCGCTCG AAGCGGCCCA CAAGCTTGGC CGGGGCCTGG AACGGCTGGT GATGTTCTCA AGCCTGTCGA AGCGCTCGAA CGTGCCGGGC CTGCGCTCGG GCTTCGTCGC CGGCGACCCC GAGATCCTGA AGAAATTCCT GCTCTACCGC ACCTACCACG GCGCCGCGAT GAACCCGGCC GTGCAGGCCG CCAGCGCCGC GGCGTGGGGC GACGAGGCGC ACGTGCGCGA GAACCGCGCG GCCTATGTGC GCAAATTCGC CGAGGTCACG CCGATGCTGG CAGGGGTGCT CGACGTGGCC CTGCCCGATG CGGCGTTCTA CCTGTGGGCC GATGTCTCGC GCACTGGTCT GTCGGACACC GAGTTCGCCG TGCGGCTGCT GGCCGAACAG AACCTCACGG TGCTGCCCGG CAGCTACCTG GCCCGCGACG CCCACGGCGT GAATCCCGGC GCGAACCGGG TCCGCATGGC GCTGGTGGCC ACCCCGGACG AATGCCTCGA AGGCGCACGC CGGATTGTCG AATTCTGCAA GTCGCTGGGC TGA
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Protein sequence | MLGFNRPAAA TVNPRLDLLQ TYPFEKLRAL VADVKPAAVP PISFGIGEPK HPTPAFIKEA MTASLGGLAN YPSTAGSDAL RACIAGWLER RYNLPKVDAA TEVLPVTGSR EALFAFAQTV IDSSKPNPLV LCPNPFYQIY EGAALLAGAR PVFANSDPAR NFAPAFDQIG ADVWPHVQLL YVCSPGNPTG AVLSLEDWKQ LFELSDRYGF VIASDECYSE IYFDEAKPPL GALEAAHKLG RGLERLVMFS SLSKRSNVPG LRSGFVAGDP EILKKFLLYR TYHGAAMNPA VQAASAAAWG DEAHVRENRA AYVRKFAEVT PMLAGVLDVA LPDAAFYLWA DVSRTGLSDT EFAVRLLAEQ NLTVLPGSYL ARDAHGVNPG ANRVRMALVA TPDECLEGAR RIVEFCKSLG
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