| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1420 |
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| Symbol | |
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| ID | 4038223 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 1534987 |
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| End bp | 1536138 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637976804 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_583572 |
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| Protein GI | 94310362 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0000737808 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0270135 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCCGA CCCTTGCCCT GACCGAAGAC CTGATCCGCC GCCGCTCGGT CACCCCCGCC
GACGAAGGTT GCCAGGCCGT GCTCGAGACC CGACTCAAGG CCCTTGGCTT TACCTGCGAG
AACATCGTCA GCGGCCCTGA CGATTTCCGC GTCACCAACC TGTGGGCGGT CAAGCGCGGC
ACCCAGGGCA CGGCAGGCAA GCTGCTGGCC TTTGCCGGCC ATACCGACGT AGTGCCGACC
GGCCCGCTCG ACCAATGGTC ATCGGACCCG TTCGAGCCCT CCCATCGCGA TGGCAAGCTC
TACGGTCGGG GCGCGGCCGA CATGAAGACG TCGATTGCCG GCTTCGTGGT GGCGGTCGAG
GAGTTCGTGG CGAAACACCC CGAGCACAAG GGATCGATCG CCTTCCTGAT CACGAGCGAC
GAGGAAGGCC CGGCGCATGA CGGCACCGTG AAGGTGGTGG AAGCGCTGAA GGCACGCGGC
GAACGTCTCG ACTATTGCGT GGTGGGCGAG CCGACCTCGG TCGACACGCT CGGCGACATG
GTCAAGAACG GCCGTCGTGG CTCGCTGTCC GGAAAGCTCA CGGTCAAAGG TGTGCAAGGC
CACATCGCCT ACCCGCACCT GGCGCGCAAC CCGATCCACC TTGCCGCGCC GGCACTGACC
ACGCTGGTGA ACGAGGTATG GGACGCGGGC AACGAGTATT TCCCGCCCAC CACGTGGCAG
ATGTCGAATA TCCATGGCGG CACCGGCGCG ACCAACGTGA TCCCGGGCCA CGTGACGATC
GATTTCAACT TCCGCTTCTC GACGGCCAGC ACGCCTGACG GCCTGAAGTC GCGCGTGCAC
GCAATCCTCG ACCAGCACGG GCTCGACTAC ACGCTCGACT GGACGCTGGG CGGCGAGCCG
TTCCTGACGC CGCGCGGCGA CCTGTCCGAA GCACTGGGCG CGGCCATCGC GGCCGAGACC
GGCGTGAAGA CGGAACTCTC GACCACCGGC GGCACCTCCG ACGGCCGTTT CATCGCGAAG
ATCTGCCCGC AGGTCATCGA ATTCGGCCCG CCGAACGCCA GCATCCACAA GATCGACGAA
CACGTGGAAG TCCGCTTCGT CGAACCGCTC AAGAACGTTT ACCGTGGCGT GCTGGAACGC
CTGATTGCCT GA
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| Protein sequence | MNPTLALTED LIRRRSVTPA DEGCQAVLET RLKALGFTCE NIVSGPDDFR VTNLWAVKRG
TQGTAGKLLA FAGHTDVVPT GPLDQWSSDP FEPSHRDGKL YGRGAADMKT SIAGFVVAVE
EFVAKHPEHK GSIAFLITSD EEGPAHDGTV KVVEALKARG ERLDYCVVGE PTSVDTLGDM
VKNGRRGSLS GKLTVKGVQG HIAYPHLARN PIHLAAPALT TLVNEVWDAG NEYFPPTTWQ
MSNIHGGTGA TNVIPGHVTI DFNFRFSTAS TPDGLKSRVH AILDQHGLDY TLDWTLGGEP
FLTPRGDLSE ALGAAIAAET GVKTELSTTG GTSDGRFIAK ICPQVIEFGP PNASIHKIDE
HVEVRFVEPL KNVYRGVLER LIA
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