| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1349 |
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| Symbol | |
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| ID | 4038152 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 1458098 |
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| End bp | 1459090 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637976733 |
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| Product | conjugal transfer protein TrbG/VirB9/CagX |
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| Protein accession | YP_583501 |
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| Protein GI | 94310291 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
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| TIGRFAM ID | [TIGR02775] P-type conjugative transfer protein TrbG |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00000992515 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGATC TTTTCCGTAA ATCCGCTTTG CCGGTGATCC TGCTTGCCCT CGTGGGCTGC
GCCTCGCAGG GCAAGCCACC GCCGACCATC TCGCTCGATG AGCCGGTGCA GGCCCAGCCG
CTGCCGGAGC CGCCCGCGCC GGTGGAGGTG GTGGCCGTGC CCGAGGTTCT ACCGATGCCG
GCGCAGTTGA AGCCGTTGCC CGAAGCTGAG GACGCCAAAC CTGCGCCGGA GCCGGCTGAC
GAGAAGGTGC GCGTCTCGCG CGCCAATGCC GAGGCCCGCG TAGCCCCCAC GCGCGAGGGC
TACGTCAATG CGATTCAGGT TTGGCCCTTC ACGGACGGGG CGCTCTATCA GGTCTATGCG
GCCGTGGGCC GCGTGACCGT GGTTTCGCTC CAGCCGGGCG AGGAACTGGT GACGGTGGCC
GCTGGCGATA CCGTGCGCTG GATCGTGGGC GACACGTCCA GCGGCAGCGG TGCCGATCTG
CGCGTGAACG TGCTGGTCAA GCCGATTCGC TCAGGCCTCA AGACCAATCT CGTCATCACC
ACCAGCCGCA GGACGTACCT GCTGGAGCTG GCTTCGACGG AAAAGACGTG GATGGCGTCG
GTGTCCTGGG AGTACCCGCG CGACCGGATG CTGGCGCTAC AGCGCCAAGC GCAGGCGGCC
AATGCCGCCG CGCCGGTCGA TGCCGGGCTG GCGCTAGAGA ACCTGCGCTT CCGCTACGCA
ATCAGCGGCA GCAATCCGCC GTGGAAGCCG TTGCGCGCCT TCGACGACGG GCAGAAGGTC
TATATCCAGT TCCCCGCTGG CATCGCGCAA GGCGAGCTGC CGCCGCTGTT CGTGATAGGG
CCGGAAGGCG ACGGGCAACT GGTGAACTAC CGCTTCCGCT CGCCGTACTA CATCGTGGAT
CGCCTCTTTG GCGCGGCAGA GCTGCGCCTG GGCGGCGACA AGGGCGCCAT GGTGCGGATC
GAGCGCACGG ATGGCGTGGC ACGGAGGAAC TGA
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| Protein sequence | MNDLFRKSAL PVILLALVGC ASQGKPPPTI SLDEPVQAQP LPEPPAPVEV VAVPEVLPMP
AQLKPLPEAE DAKPAPEPAD EKVRVSRANA EARVAPTREG YVNAIQVWPF TDGALYQVYA
AVGRVTVVSL QPGEELVTVA AGDTVRWIVG DTSSGSGADL RVNVLVKPIR SGLKTNLVIT
TSRRTYLLEL ASTEKTWMAS VSWEYPRDRM LALQRQAQAA NAAAPVDAGL ALENLRFRYA
ISGSNPPWKP LRAFDDGQKV YIQFPAGIAQ GELPPLFVIG PEGDGQLVNY RFRSPYYIVD
RLFGAAELRL GGDKGAMVRI ERTDGVARRN
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