Gene Rmet_1280 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_1280 
Symbol 
ID4038083 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp1400002 
End bp1401393 
Gene Length1392 bp 
Protein Length463 aa 
Translation table11 
GC content64% 
IMG OID637976666 
Productintegrase catalytic subunit 
Protein accessionYP_583434 
Protein GI94310224 
COG category[L] Replication, recombination and repair 
COG ID[COG2826] Transposase and inactivated derivatives, IS30 family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.722165 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.296416 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATCTGA GGCTGCACAA GAACGCCACC ACGACACCCA GGATCCGCGC CGAGATCCAG 
GTCAGCAAGG AGCCCATGAG GGTTCTGGCC CAGCGCTTTG GCGTGAGTGT CTCCACCATC
GCTCGCTGGA AGAAGCGTGC ATCGGTTCAT GACGCCTCCC ATACCCCTCA TCGACTGCAA
ACCACGCTGA CGCCGGCCCA GGAGTCCATC GTGCTCGTCT TGCGTAAAAG CCTGGGCCTT
TCGCTGGATG ACCTGCTGGC AGTCGTACGC GAGTTCATCC ATCCGACCGT CTCACGCGCT
GCCTTGCACC GCATGCTCAA ACGCCATGGA GTGTCGGCGC GCGAGGCATT GAGCGTGGAT
CGCCCCAGGA CCAAGCCGTT CAAGGCCTAC GAGCCCGGCT TCGTCCACAT CGATGTGAAG
TACCTGCCGC AGATGGCGGA CGAAACCACG CGGCGTTACC TGTTTGTGGC CATTGATCGC
GCCACCCGCT GGGTGTTCGT GCGTGTCTAT GCCAGCAAGA GCGCTACCAA CGCCCGGCGC
TTCCTGAAGG AATTGCACAA GGCCGCTGCC TTCCGTATCC GAACGATCCT GACCGACAAC
GGCAAGGAAT TCACGGATCG CTTCATCACA CGGGGAGAGC GTACGCCGAC CGGCAGGCAT
CAGTTCGATC AGCTCTGCGA GGAGCTAGGC ATTGAGCATC GCCTGACCCG CCCAAAACAC
CCGCAGACCA ACGGCATGGT TGAACGCTTC AACGGGCGCA TCGCCGACAT CCTGCGCACC
CATCACTTCC ATTCCGGCGA AGAACTTGAG GCCACCATCC TGCGGTATGT CTGGCTGTAC
AATCACCAAC TGCCACAGAA AGCCTTGGGG CATGTCAGCC CCATCCAGGC CATGAAACAA
TGGCAGCGAT CACACCCCGA ACTGTTCAAC AGACGTGTTA CCAATCAGCC GGGACACGAC
ACGATCTCGG CCTTGCCGCT TTCGGTCTTG CGAAACACCA GACTCGACAT CACACGTCTC
CTCGTCTCTT GTTTTCATCA GACCCCGCCC AGAGCGAGGT GCCCCTTCGA GGGGCACCGA
GGAACCGGCT CCGCCGGGCC TCAGGTGCCG TCCCCCTGCC CAGCGCCGAA GGCGCGCCAG
AGCGGGGGGA AGCCGCGCAG CGGCGCAGGG GGGTGTCAAC AAATCCTCGG CAGCTGCTCC
CCACTCAGCC AGTCCACCAC CCGCCGCCCG CCGAAGCGCG TGGCCATCTG CACGAAGTGG
TGCGGGTCGG TGGTGACCTC GCCGATGCGG GCCGCGTCCT GCCCCAGCGG GTGGGCGCGC
ATGGCGGCCA GCACGGCCTC GGCCGCCTCG GGCGCGACCA CTGCGATCAG CTTGCCCTCG
TTGGCCACGT AG
 
Protein sequence
MHLRLHKNAT TTPRIRAEIQ VSKEPMRVLA QRFGVSVSTI ARWKKRASVH DASHTPHRLQ 
TTLTPAQESI VLVLRKSLGL SLDDLLAVVR EFIHPTVSRA ALHRMLKRHG VSAREALSVD
RPRTKPFKAY EPGFVHIDVK YLPQMADETT RRYLFVAIDR ATRWVFVRVY ASKSATNARR
FLKELHKAAA FRIRTILTDN GKEFTDRFIT RGERTPTGRH QFDQLCEELG IEHRLTRPKH
PQTNGMVERF NGRIADILRT HHFHSGEELE ATILRYVWLY NHQLPQKALG HVSPIQAMKQ
WQRSHPELFN RRVTNQPGHD TISALPLSVL RNTRLDITRL LVSCFHQTPP RARCPFEGHR
GTGSAGPQVP SPCPAPKARQ SGGKPRSGAG GCQQILGSCS PLSQSTTRRP PKRVAICTKW
CGSVVTSPMR AASCPSGWAR MAASTASAAS GATTAISLPS LAT