Gene Rmet_1159 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_1159 
Symbol 
ID4037957 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp1267354 
End bp1269582 
Gene Length2229 bp 
Protein Length742 aa 
Translation table11 
GC content65% 
IMG OID637976541 
Product(p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA 
Protein accessionYP_583314 
Protein GI94310104 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.123492 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTGACAT CGACGGAGCT GACGGGGCAG ACCGCGGGCG TGCCCGACGC CGGGCTCGTC 
GAGCGCGCGC TCGCGTATGT GCGCGAGAAG GCCGACGGCG AGAAACCCAC GACACTGCCC
ACCGGCGAGA CCGTGCTGTC TCACGCCGAG GGGATGCTGC GTATCCTGGA TGGCCTGCGC
GTGGACGATG CCGCGCGTGC GGCGGCGTGC CTGTTCCCGA TGGTGGCGTT TGTGCCCGGC
GTCGAGGCGC ACATCGAGGA GCGCTTCGGC GAGGACGTGG CGCGGCTGGT GAAGGGCGTG
CGGCAACTGT TGCGGATTGG CGCGATCGCC ACGCAGGCCG AGGCCGTCGA AACGTCGAAG
TCGCAGGCGG CGGCGCGGCA GGAGCAGGTG GAGGCGCTGC GCAAGATGCT GCTGGCCTTC
GCGCAGGACA TCCGTGTGGT GCTGGTGCGG CTGGCTTCGC GTCTGCAGAC GTTGCGCTGG
CTGGCGCAGA CCAAGAGCCA GCCGCTGCCA GGCGTGGCGC GCGAAACGCT CGATATCTAC
GCGCCGCTGG CGAACCGGCT GGGTATCTGG CAGATGAAGT GGGAGCTCGA GGATCTGGCC
TTCCGCTTCG AGCAGCCCGA GACCTACAAG CGCATCGCCA AGCTGCTCGA CGAAAAACGC
ATCGAGCGAG AGGGCTATAT CTCGCAGGCG ATCGCGCGGC TGCAGTCCGA GCTGGCGGCG
GCGGGCATTC GCGCCGAAGT GACCGGGCGA CCCAAGCACA TCTACAGCAT CTGGAAGAAG
ATGCGGGGCA AGGCGCTCGA TTTCGCCGAT CTCTACGACG TGCGCGCCTT CCGCGTGATC
GTCGACGACA TCAAGGACTG CTATACGGTG CTCGGTATCG TGCACCACAT CTGGCAACCG
ATTCCGCGCG AGTTCGACGA CTACATTTCG CGGCCGAAGG CGAATGGCTA CAAATCCCTG
CACACGGTGG TGATCGGCGA CGATGGCCGA GCGTTCGAGG TGCAGATCCG TACGCACGAG
ATGCACCACT TCGCCGAGTA CGGCGTGGCG GCGCACTGGC GCTACAAGGA GGCGGGTGGC
AAGGGCTATA GCGGTCAGTT CACGGCGGAC AACAGCTACG ACGAGAAAAT CGCGTGGCTG
CGGCAACTGC TGGCGTGGAA GGATGATGCC GATCATACGG TCACGCACGA GGATTCGCCG
TGGGAGCAGC TCAAGCACGC AGCAATCGAC GACCACATCT ATGTGCTGAC GCCGCAGGCG
CGTGTGGTGG CGTTGCCCCA GGGCGCCACG CCGGTGGATT TTGCCTACTA CCTGCATAGT
GACCTCGGTC ATCGTTGCCG CGGTGCGCGC GTCGATGGCG CGATGGTGCC GCTCAACACG
CCGCTCAAGA ACGGGCAGAC CGTGGAGATC GTGGCGGTCA AGCAGGGTGG GCCATCGCGT
GACTGGCTGA ACCCCGAGCT GGGCTACCTG GCCAGCAGCC GCGCGCGCGC CAAGGTGCGT
GCATGGTTCA ATGCACTCGA CTCTCAGGAG ACGATTGCCC AAGGGCGCGC CCTGATCGAA
AAGACGTTGC AGCGCGAGGG GAAGACGGCG GTCAATCTCG ACGATCTCGC CACCCGACTC
AACTTCAAGA CACCCGATGA TCTGTTCGCG GCGGTGGCGA AGGAAGAGTT CAGCCTGCGC
CACGTGGAGC AGGCGCTGCG GCATCCGGAC GGGGAAGTGC AGCCGCAGTT CAGCGAGGAA
GAGGCCGTTA CCAAGAAGAG TCGCGCCACC AGCGTGGCGC GCGGCGCCAA GAGTGGCGTG
CTCGTGGTGG GCGTCGATTC GCTGATGACC CAAATGTCTC GCTGCTGCAA GCCGGCGCCG
CCGGACGATA TCGTTGGCTT CGTGACTCGT GGTCGGGGTG TGTCGATCCA TCGACGCAAC
TGCCACACGT TCCAGCAACT GTCGACGCGA GACCCCGAGC GGGTGATCCA GACGGAGTGG
GGCAAGCGCA GCGATGCCGT GTATCCCGTG GACATCCAGG TGGAGGCGAT CGACCGGCAA
GGCTTGCTGC GCGATATTTC CGAAGTGCTT TCGCGCGAAA AGATCAACGT CACGGGTGTG
AAGACGCTGT CGAGCAAGGG TGTCGCTCGA ATGCAGTTCA CGGCGGAGGT TGCCGAGGCC
ACGCAACTTC AGCGTGCGAT TTCCCTGATC GAAGAAGTGC AGGGGGTGTT GCACGCGAAA
CGAAAATAA
 
Protein sequence
MVTSTELTGQ TAGVPDAGLV ERALAYVREK ADGEKPTTLP TGETVLSHAE GMLRILDGLR 
VDDAARAAAC LFPMVAFVPG VEAHIEERFG EDVARLVKGV RQLLRIGAIA TQAEAVETSK
SQAAARQEQV EALRKMLLAF AQDIRVVLVR LASRLQTLRW LAQTKSQPLP GVARETLDIY
APLANRLGIW QMKWELEDLA FRFEQPETYK RIAKLLDEKR IEREGYISQA IARLQSELAA
AGIRAEVTGR PKHIYSIWKK MRGKALDFAD LYDVRAFRVI VDDIKDCYTV LGIVHHIWQP
IPREFDDYIS RPKANGYKSL HTVVIGDDGR AFEVQIRTHE MHHFAEYGVA AHWRYKEAGG
KGYSGQFTAD NSYDEKIAWL RQLLAWKDDA DHTVTHEDSP WEQLKHAAID DHIYVLTPQA
RVVALPQGAT PVDFAYYLHS DLGHRCRGAR VDGAMVPLNT PLKNGQTVEI VAVKQGGPSR
DWLNPELGYL ASSRARAKVR AWFNALDSQE TIAQGRALIE KTLQREGKTA VNLDDLATRL
NFKTPDDLFA AVAKEEFSLR HVEQALRHPD GEVQPQFSEE EAVTKKSRAT SVARGAKSGV
LVVGVDSLMT QMSRCCKPAP PDDIVGFVTR GRGVSIHRRN CHTFQQLSTR DPERVIQTEW
GKRSDAVYPV DIQVEAIDRQ GLLRDISEVL SREKINVTGV KTLSSKGVAR MQFTAEVAEA
TQLQRAISLI EEVQGVLHAK RK