| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0930 |
|---|
| Symbol | |
|---|
| ID | 4037727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 1014006 |
|---|
| End bp | 1015259 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637976311 |
|---|
| Product | NADH dehydrogenase subunit D |
|---|
| Protein accession | YP_583085 |
|---|
| Protein GI | 94309875 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0649] NADH:ubiquinone oxidoreductase 49 kD subunit 7 |
|---|
| TIGRFAM ID | [TIGR01962] NADH dehydrogenase I, D subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.156514 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGATA TCAAGAACTA CACCCTCAAC TTCGGCCCCC AACACCCTGC AGCGCACGGC
GTGCTGCGTC TGGTGCTTGA ACTGGACGGC GAAGTCATCC AGCGCGCCGA CCCCCATATC
GGCCTGCTGC ATCGAGCCAC CGAAAAGCTG GCCGAGCAGA AGACCTGGAT TCAAAGCGTC
CCCTACATGG ATCGTCTCGA CTACGTGTCG ATGATGGTCA ACGAACACGC GTACGTGATG
GCGATCGAGC GCTTGCTGGG CCTCGAGGTG CCGATTCGCG CCCAGTACAT CCGCGTAATG
TTCGACGAAA TCACCCGTCT GCTGAACCAC CTGATGTGGA TCGGCTCGCA CGCGCTGGAC
GTGGGTGCGA TGGCGGTGTT CCTCTACGCG TTCCGCGAGC GTGAGGACAT GTTCGACATG
TACGAGGCGG TGTCGGGCGC GCGTATGCAC GCGGCCTACT ACCGTCCGGG CGGCGTCTAC
CGCGACCTGC CTGACACGAT GCCGCAATAT CGTGCGTCGA AAGTCCACAA CGAGAAGGCC
ATCAAGGTCA TGAACGAAGC CCGTTCGGGC TCGCTGCTGG ACTTCATCGA GGACTTCACG
AACCGTTTCC CGACCTATGT CGATGAATAC GAGACGCTGC TGACCGATAA CCGTATCTGG
AAGCAACGTC TGGTCGATAT CGGTGTGGTC ACGCCGGAGC GTGCGCTGCA GATGGGTTTC
ACCGGTCCGA TGCTGCGTGG CTCGGGTATC GAGTGGGATC TGCGCAAGAA GCAGCCGTAC
GAGGTCTACG ACAAGATGGA CTTCGATATC CCCGTGGGTA CGGCGGGCGA CTGCTATTCG
CGTTACCTGG TGCGTGTTGA AGAAATGCGC CAGTCGAACC GCATCATCAA GCAGTGCATT
GACTGGCTGC GTCGCAACCC GGGTCCGGTG ATTACCGAGA ACCACAAGGT GGCGCCGCCG
TCGCGTGTGG ACATGAAGTC GAACATGGAA GAGCTGATTC ACCACTTCAA GCTCTTCACC
GAAGGTATCC ACGTGCCGGC AGGCGAGGCC TACGCAGCGG TGGAGCACCC GAAGGGCGAG
TTCGGCATCT ATGCGATTTC GGATGGCGCG AACAAGCCGT ACCGTCTGAA GATCCGTGCC
CCGGGCTTTG TCCACCTGGC CGCGCTCGAC GAAATGGCCA GGGGACACAT GATTGCGGAT
GCGGTCACGA TCATCGGTAC ACAGGACATC GTGTTCGGCG AGATCGACCG CTAA
|
|---|
| Protein sequence | MADIKNYTLN FGPQHPAAHG VLRLVLELDG EVIQRADPHI GLLHRATEKL AEQKTWIQSV
PYMDRLDYVS MMVNEHAYVM AIERLLGLEV PIRAQYIRVM FDEITRLLNH LMWIGSHALD
VGAMAVFLYA FREREDMFDM YEAVSGARMH AAYYRPGGVY RDLPDTMPQY RASKVHNEKA
IKVMNEARSG SLLDFIEDFT NRFPTYVDEY ETLLTDNRIW KQRLVDIGVV TPERALQMGF
TGPMLRGSGI EWDLRKKQPY EVYDKMDFDI PVGTAGDCYS RYLVRVEEMR QSNRIIKQCI
DWLRRNPGPV ITENHKVAPP SRVDMKSNME ELIHHFKLFT EGIHVPAGEA YAAVEHPKGE
FGIYAISDGA NKPYRLKIRA PGFVHLAALD EMARGHMIAD AVTIIGTQDI VFGEIDR
|
|---|
| |