| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0757 |
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| Symbol | |
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| ID | 4037548 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 835206 |
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| End bp | 836990 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637976133 |
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| Product | Lipid A export ATP-binding/permease protein MsbA |
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| Protein accession | YP_582912 |
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| Protein GI | 94309702 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00726386 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCAAGTG GAGCGAACGT GACCGACAAC AAACAACAAA CGCCCCAGGA ATCCGATACC
CTCAAGCGCG TCTGGGCCTA TCTGAAGCCC GAGAAGCGCA ACTTCGTGCT CGCCATCATC
GCCATGGGCC TGGTGGCGGC CAGCGAAGGG ATTATTCCGA AGGTCGTCAA CGACCTGCTC
GACAAGGGCT TCGGCGGCAG CTACGCGGGC AAGCTCTGGC ATGTGCCCGC GCTGCTGGTG
GGCGTGGCGC TGGTGCGCGG CCTGGCGCAG TTTGCCTCGG GCTACCTGCT TTCGCAGATA
TCGAACGGCG TGTTGCTGAA GATGCGTATG CAGATGTTCG ACCGGATGCT GCACGCGCCG
GCGCTGTTCT TCCACCGCAA TACCGCTGCC TCGCTGATCA ATGCCGTGAT CTTCGAGGTG
AACCAGGTGA TGCAGATCCT CACTGGCGTG CTGATCACAC TGGTGCGTGA CTCGCTGACC
GTGGTGGCGC TGCTGATCTA CCTGTTCTAC ACGAACTGGA AGCTGACCCT GGTGGTGGCA
GTGCTGCTGC CGGCGATCGG CTTCGTGATG TCGAAGGTCA ACCGCCGCCT GCGTCGCCTG
AACCGTGAGC ATCAGGCGCT GACCAACACC GCCGCCTATG TGGTGGAGGA ATCCGTGGGC
GGGTTCAAGG TGGTCAAGCT GCACGGTGGC GAAGCGTACG AAATGTCGCG TTTCGAGGCG
ATGGCCGAGC GGCTGCGCGG CTACTCGATG CGCATGGCTG TGGCCGGTGG CCTGAATCAG
CCCGTGACGG CGTTCCTGGC ATCGCTGGCG CTGTCCGTGA TCCTGACGAT CGCGATGATT
CAGGCGCAGG GCAACCAGAC CACGATCGGT GGCTTCACCG GCTTCGTGAT GGCGATGCTG
CTGCTGATCT CGCCGCTCAA GCATCTGGCC GACCTGAACC AGCCGCTGCA ACGCGGCCTG
ACCGCGGCCG AGATGATCTT CGGCCTGATC GACGAGCCGA TCGAGCCGCA GAACGGTGGC
CTGCCGCTGG AGCGGGCCCG TGGCGATCTG GTGTTCGACA ACGTCGGCTT CCGCTATGGC
GATGCCGCGC GCGCGGCGCT GAACCATGTC AGCCTGCGTG CCGCACCGGG CGAGGTCGTG
GCGCTGGTGG GGCCGTCGGG TAGCGGCAAG ACCACGCTTG TGAACCTGGT GCCGCGCTTT
TTCGATCCGA CCGAGGGTCA CATCTTGCTC GACGGTCAGC CGATCGACCG TTTCGCGCTG
GCCGACCTGC GTCGCCAGAT CGCCTTCGTC AGCCAGGATG TGGTGCTGTT CAACGACACC
GTGGCCGCCA ATGTGGCCTA TGGCGTGCAT CCGCGCGAGA AAATCGATAT GGCCCGCGTG
GAACGCGCGC TGGCGGCTGC CTACCTGACC GACGTGGTCA AGGGGCTGCC GGAAGGGCTC
GAAACGAACA TCGGCGACAA CGGCATGAAG CTGTCTGGCG GCCAGCGCCA GCGTCTGGCC
ATCGCGCGCG CGATCTACAA GGATGCGCCG ATCCTGATCC TCGATGAGGC GACTTCGGCG
CTTGACTCAG AGTCGGAGCG TCAGGTGCAG GCCGCGCTGG AATCGCTGAT GGTCGGTCGC
ACCACGCTGG TGATCGCGCA CCGCCTGTCG ACGATCGAGA ACGCCGACAG GATCGTGGTG
CTGGAGCAGG GTCGTGTAGC CGAACAGGGC AGCCACGCCG AGCTGATCGG CAAGAACGGC
CTGTACGCGG GCCTGCATCG CATCCAGTTC GCGTCACAGG CATAA
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| Protein sequence | MASGANVTDN KQQTPQESDT LKRVWAYLKP EKRNFVLAII AMGLVAASEG IIPKVVNDLL
DKGFGGSYAG KLWHVPALLV GVALVRGLAQ FASGYLLSQI SNGVLLKMRM QMFDRMLHAP
ALFFHRNTAA SLINAVIFEV NQVMQILTGV LITLVRDSLT VVALLIYLFY TNWKLTLVVA
VLLPAIGFVM SKVNRRLRRL NREHQALTNT AAYVVEESVG GFKVVKLHGG EAYEMSRFEA
MAERLRGYSM RMAVAGGLNQ PVTAFLASLA LSVILTIAMI QAQGNQTTIG GFTGFVMAML
LLISPLKHLA DLNQPLQRGL TAAEMIFGLI DEPIEPQNGG LPLERARGDL VFDNVGFRYG
DAARAALNHV SLRAAPGEVV ALVGPSGSGK TTLVNLVPRF FDPTEGHILL DGQPIDRFAL
ADLRRQIAFV SQDVVLFNDT VAANVAYGVH PREKIDMARV ERALAAAYLT DVVKGLPEGL
ETNIGDNGMK LSGGQRQRLA IARAIYKDAP ILILDEATSA LDSESERQVQ AALESLMVGR
TTLVIAHRLS TIENADRIVV LEQGRVAEQG SHAELIGKNG LYAGLHRIQF ASQA
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