Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_0614 |
Symbol | |
ID | 4037403 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | - |
Start bp | 668983 |
End bp | 674208 |
Gene Length | 5226 bp |
Protein Length | 1741 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637975989 |
Product | Outer membrane autotransporter barrel |
Protein accession | YP_582769 |
Protein GI | 94309559 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain [TIGR01901] filamentous haemagglutinin family N-terminal domain [TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0347869 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAACCATA TCTATCGACT TGTCTGGAAT CGCACGCTGT GCGCATTGAA GGTGGCGCCG GAAACGGCCG GAAGCCAGGG CTCGGGAGGC ACGGGCACCG CAACTATCGC CCCAACGGCT TCCCGGCGGC GTACCGGCTG GAGCGTCGGC TTGCCGGCAC TGTCGGCGCT TTCCGCGGGC CTGCTCCCCG CCATTGCGAT GGCTGCCACA CCGATTGCCG GAACGCTGCC AACCGGCCCG GTCTGGATCA GCGGGAGCGG GACTGTCAAC TCGATAGGGA CCACCACGAC GGTCAATCAA TATTCGTCAT CGGGCACGAT CAACTGGTCC TCGTTCGATG TTGCTGCGTA CAGTACGGTC AATTTCACGA CGGGTTCCAA CGCCGTCACC CTCAACAACA TTTCTGGCAC TACAGCCAGC CAGATCTACG GATCCGTGTC GGCAGCCGGG CAGACGATCC TTGCCAATGC AAACGGCCTG GTTTTCGGTG GCACGACATC AACCGGCGGA CTTCTCGCCA CCTCGCTCGG TGTTTCCGCC CCTGCCACGA CGGGCGGCAG CTACAGCCTC GATGCAGCGG CCACGCGCGG CACCGTAGCG TTTGCTGGCG GTGCAACGTT CAATGGCAAC TCGGCGGCAC TCGTCGGCGC CGGCGTATCG AACAATGGCT TGCTGATGGC CAATGGCGGG CGAATCAGCC TGGTGGCCGC AGACCACGCA ACGATGACGT TCGACGACAG TGGCCTAATG AATGTTGCCA TTTCCGGCGC ACTGAGCACC ACGCAGGGCA GCACCGCGGT CGTCAATACG GGAACCCTCC TGGCAACCGG AGGCACGATC GTCATGGCGG CAGCAGCCCA GCCGGGGTTG TACGGCACGC TGGTCAACAA CAGCGGCGTC ATCAACGCGA ATGGTGGAAA CGTCAGGCTT AGCGGAACAG GGGGCGCCGT AGTCAACAAC GGCAGCATCG ACGTCTCGCA GGGTGGCCAG TCCCAAGCTG GGCAGGTTCA GATCACGTCG GACGCCGCCG TGAGCCTGGG GGGCAACATC GACGCGTCGG GCACGACGAC GGGCGGCTCG ATTGCCATCT CGGGTGGTAG TGTCCAGCTC GGTGGCACGC TGACCGCCGG GACAGGCCAG ATCAACCTGC AATCGTTGGG GGACGTCCTC CAGACCTGGG GCAGCCTGAC AGCGGGAACC CTGACAGGCA GCGCCATCGG CAGCATGAAG CTCGACCAGA GCAGCAACAA CATTGCCGCG CTCGGGCCGA TCAGCACTGG CGGCGACTTC GCGTTGACCA CGACCCGTTC GCTTGGACAA TCCGGCATGC TGATGGTCGG TGGCGATACC ACGATCAACG CGGGCACGAA CGCCATTACG CTGACCAACG CCAGCAATGC GTTCGCTGGC GCGGTAAATC TGACCGGTGG CGCCACGCAG ATCACCAGTA GCTCGGGACT GAACTTGGGC ACCGTCAACG CCGGCACATT GACCGCCACA AGCACGGGTG CGTTGGTCTT CGGCACCACC GCCGTGAACG GTAGCCTGTC GGCAACGAGC AACCGCGGCT TCATCATGCA AAACGGTGCG CTCACCATTG CGGGCAACAG CACCTTCAAT GCCGGCACGG GCGCTATCTC GCTAACCAAC GTCGGAAACT GGTTCGGTGG CACCGTGAAC CTGACCGGTG GCGCCACGAC CATCAGCAGC GCCTCGGCGC TGACCTTCGG TAACGTCAAT ACGGATACAT TGCTTGCCAC GAGTCTGGGT CCAATGAACC TTGGCACCGG CACGGTGCGT GGCAACCTGT CGGCATCCAC CATCGACAAG GCCATCACCC AAAGCGGCGC GCTTAGCGTT GCCGGTAGCA CCACCATCAG TGCCGGCACT GGCGCCATCA CATTGACCGA CGCGGGCAAT AGCTTTCAGG GCCCGATCGC CATCTCGGGC GGTAGTGTCC AGATCGGTGG CACGCTGGCC GCCGGGACAG GCCAGATCAG CCTGCAATCG TTGGGGGACG TCCGCCAGAC CGGGGGCAGC CTGACGGCGG GAACCCTGAC AGGCAGCGCC ATCGGCAACA TGACGCTCAA CCAGAGCAGC AACAGCATCG CCGCGCTCGG GCCGATCAGC ACGGGCGGCG ACTTCGCGTT GACCACGACC CGTTCGCTTG GACAATCCGG CGCGCTGTCG GTCGGAGGCG ATACCACGAT CAATGCGGGA ACGAACGCCA TCTCGCTGAC CAACGCCAGC AATTCGTTCG CTGGCGCGGT AAGCCTGACC GGTGGCACCA CGATAATCAG CAGCGCCTCG GCGCTGACCT TCGGTAACGT CAATACGGAT ACGTTGCTTG CCACGAGCCT GGGTCCAATG AATCTTGGCA CCGGCACGGT GCGTGGCAAC CTGTCGGCAT CCACCATCGA CAAGGCCATC ACCCAAAGCG GCGCACTCAG CGTTGCCGGT AGCACCACCA TCAGCGCCGG CACTGGCGCC ATCACATTGA CCGACGCGGG CAACAGCTTT CAGGGCCCGA TCGCTGCAAC GGGCTCCAGC GTGGCCTTGC GCGCGGCTGG CGATCTGCGC GTCTCGGCGC TAAACAACAG CACGAACGGC GCGGTCAGCC TGACCGCTGG CGGGGCGTTG ACGCTACCGG TATCGGCAAT CAACACCGGC ACGAGCAATC TGCAACTCGC GGCCAACGGC GGCACGTTGC TGGCCAATGC CGCGTTGAGC GGCAGCAATG TCACGATCTC CGCCCGCGAC GGCATCGCGC TGTACGGGCC AGTGACGGCC AGCGGACAAC TCGCGCTCAG TACAAGCGCC GGCCAGTGGA TCTTCGCGCT GGGGGACGTG CGGGCCGCCA CCACACAACT CAGCAGCGGC ACACTGCGCA TCGGCAACGC CACCACCACC GGCAGCATTG GCGGTAACGT GGTCAACAAC GGCACACTGA TGTTCAACCG GACCGACAGC ATCGGCTACG CCGACGTCAT CAGCGGCACC GGGAATCTCG TCCAGCAAGG CACCGGCACC TTGACCCTGA CTGGCGTCAA CACCTACACC GGCGCGACAC AGGTCGCCGG CGGCACGCTT GCCCTGTCCG GCGCGGGCAG CATCGCAAAC TCCAGCGGTG TGCAAGTCGA TGCCGCGGGC ATCCTCGACA TCTCTGGCAT CACTGCGGCG CAAGCCAGCT TCGGCAGCCT GAGTGGCGCT GGCCAGATCA AGCTGGGCAC CCGGACGCTG GCAACGGGCG GTGACAATAG CAGTGGCACC TTGTCTGGCG CGATCTCCGG CACGGGTGGT TTGCTCAAGA CCGGCAGCGG CACGCTGACG CTTGGCGGCG ACAACAGCTT CAGTGGCGGC ACCGCGCTCA AGCAAGGACG CATTGACCTT GGCAGCAACG GCGCGCTGGG GACCGGCACA CTCTCGATGG ATGACGGCAC CACGCTCGGC ATTGCCACCG ATGGGCTTCG CATCGCCAAT GCGATCCGCC TGACGGGCAG CAATGATCCT GTGATCGACA CCGGCGCCTT CAATGCCACG CTCGCCGGGG CCATCAGTGG TTCGGGCTTT CTCACCAAGA ACGGCAGTGG CGCCTTGACG CTTGCCGGCG CCAACGACTA CACCGGCGCC ACCAACGTTG CGGCCGGCAC GCTGCGGGCG GGGGCGGCCA ACACCTTCAG CGCGGCATCC GTTCACACGG TGGCCAGCGG CGCCACGCTG GATCTCGCCG GTTTCAGCCA GCGTGTCGCG GGACTGAACA ACGGGGGCGT GGTCTCGCTG ATGGGCACGA CACCGGGCGC GACCTTGACG GTGACGGGCC CCTACACGGG CAACAACGGC TCGCTGCGCA TGGGCACTGC GCTCGGCGAC AGCACCGGCG TAAGTGACCG GCTGATCCTC AGCGGCCCCG CCGCCATCGC CAGCGGTCAG ACCACGCTGC AGATCACCAA CCTGAATGGG CTTGGCGCGC TGACCGCGGG CAACGGCATC GAGGTGATCA GCGCCGTCAA TGGCGCCAGC ACCACGGCGC AGACCAGCAA GAACGCGTTC GTGCTCGCCG GTGGCCATGT GGATGCCGGC GCCTACCAGT ACCGCCTGTA CGCTGCCGAC GCCAAGGGAT CGGGCGAGAA CTGGTATCTG CGCTCCAATG GCGAAACCGG CGAGACCGGC GAGACCGGCG AGCCTACCGA AACCACCCCG ACCACCGAAC CTGCGGACCC GCCCGTCACG ACCTACCGTG CCGAAGCCGC GCTGTACGCG GCGCTGCCGA GTCAACTGCG CCAGAGCAAC CTTGCCATGA TCGGCAACCT GCACCAGCGC GTGGGCGATG ACGACCCGAG GTCCGCTACA TCGGGCACCC TATCCGGCAC CCCATCGGGC ACCCCTGCCG GTCGCGATCG TCGGGCATGG GCCCGCGTGC TGACCACCGA TGTCGACGTC AGCCAGGACG GCACGGTGTC GCCCAAGAGC AAGGGCCGGT TGACCGGCTT CCAGGCCGGC ACGGATTTGC TGGCCACGCA AGACTGGCGC GCCGGCCTCT ACGTCGGCCA ACTGGATGGC AACGTAAGCG TCAATGGCTT CGTCGGCGGC ATCGCCAATA CTGGCGCCGG CCGCAACGAT CTGCACAACC AGTATCTGGG CTTCTACGGC ACGTATGCCG GGAACAGCGG CTTCTACGCC GACGCCGTGC TGCAGTTGGG CCGTCACCGC TACACGGTGA CGCCAGCGTC CAGCTCCGGG GTCGAGACCA AGGGAGACAG CCTGCTGGCA TCGCTGGAAT TGGGACGCGC CTTTCCGCTT GGCGGCAGCG CCTGGAGCAT CGAGCCCCAG TTACAGGTAG TTCACCAACG CATTCATCTC GACAACGCGC AGATCCCCGG AGCAACGGTC CAGAACGACG TGAACAGCAG CTGGCTCGCG CGCGTCGGCG CACGGGTGAA GGGTGAAATG GAGGCAGGCT CCGCCGCGTT GCGGCCATAT GGCCGCGTCA ACCTCTACAT GGCGTCGAAC GGTAGCGACG TCGCCCGCTT CACGAACCCG GCCGCCACCA CCGACATCGT GGCAGCGACC GGCGGCACGA GCATCGAAGT GGCCGCGGGC CTAACCGCGG CCCTGAACCG ACGCTTCAGC CTGTACGGCG AGGTGGGCAG GATCTGGGCC GCCGGCGGCA ATGCCAAGGT CAGAAACTCG ATCCTTGGCT CCGCCGGGTT GCAGGTCAAG TGGTAG
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Protein sequence | MNHIYRLVWN RTLCALKVAP ETAGSQGSGG TGTATIAPTA SRRRTGWSVG LPALSALSAG LLPAIAMAAT PIAGTLPTGP VWISGSGTVN SIGTTTTVNQ YSSSGTINWS SFDVAAYSTV NFTTGSNAVT LNNISGTTAS QIYGSVSAAG QTILANANGL VFGGTTSTGG LLATSLGVSA PATTGGSYSL DAAATRGTVA FAGGATFNGN SAALVGAGVS NNGLLMANGG RISLVAADHA TMTFDDSGLM NVAISGALST TQGSTAVVNT GTLLATGGTI VMAAAAQPGL YGTLVNNSGV INANGGNVRL SGTGGAVVNN GSIDVSQGGQ SQAGQVQITS DAAVSLGGNI DASGTTTGGS IAISGGSVQL GGTLTAGTGQ INLQSLGDVL QTWGSLTAGT LTGSAIGSMK LDQSSNNIAA LGPISTGGDF ALTTTRSLGQ SGMLMVGGDT TINAGTNAIT LTNASNAFAG AVNLTGGATQ ITSSSGLNLG TVNAGTLTAT STGALVFGTT AVNGSLSATS NRGFIMQNGA LTIAGNSTFN AGTGAISLTN VGNWFGGTVN LTGGATTISS ASALTFGNVN TDTLLATSLG PMNLGTGTVR GNLSASTIDK AITQSGALSV AGSTTISAGT GAITLTDAGN SFQGPIAISG GSVQIGGTLA AGTGQISLQS LGDVRQTGGS LTAGTLTGSA IGNMTLNQSS NSIAALGPIS TGGDFALTTT RSLGQSGALS VGGDTTINAG TNAISLTNAS NSFAGAVSLT GGTTIISSAS ALTFGNVNTD TLLATSLGPM NLGTGTVRGN LSASTIDKAI TQSGALSVAG STTISAGTGA ITLTDAGNSF QGPIAATGSS VALRAAGDLR VSALNNSTNG AVSLTAGGAL TLPVSAINTG TSNLQLAANG GTLLANAALS GSNVTISARD GIALYGPVTA SGQLALSTSA GQWIFALGDV RAATTQLSSG TLRIGNATTT GSIGGNVVNN GTLMFNRTDS IGYADVISGT GNLVQQGTGT LTLTGVNTYT GATQVAGGTL ALSGAGSIAN SSGVQVDAAG ILDISGITAA QASFGSLSGA GQIKLGTRTL ATGGDNSSGT LSGAISGTGG LLKTGSGTLT LGGDNSFSGG TALKQGRIDL GSNGALGTGT LSMDDGTTLG IATDGLRIAN AIRLTGSNDP VIDTGAFNAT LAGAISGSGF LTKNGSGALT LAGANDYTGA TNVAAGTLRA GAANTFSAAS VHTVASGATL DLAGFSQRVA GLNNGGVVSL MGTTPGATLT VTGPYTGNNG SLRMGTALGD STGVSDRLIL SGPAAIASGQ TTLQITNLNG LGALTAGNGI EVISAVNGAS TTAQTSKNAF VLAGGHVDAG AYQYRLYAAD AKGSGENWYL RSNGETGETG ETGEPTETTP TTEPADPPVT TYRAEAALYA ALPSQLRQSN LAMIGNLHQR VGDDDPRSAT SGTLSGTPSG TPAGRDRRAW ARVLTTDVDV SQDGTVSPKS KGRLTGFQAG TDLLATQDWR AGLYVGQLDG NVSVNGFVGG IANTGAGRND LHNQYLGFYG TYAGNSGFYA DAVLQLGRHR YTVTPASSSG VETKGDSLLA SLELGRAFPL GGSAWSIEPQ LQVVHQRIHL DNAQIPGATV QNDVNSSWLA RVGARVKGEM EAGSAALRPY GRVNLYMASN GSDVARFTNP AATTDIVAAT GGTSIEVAAG LTAALNRRFS LYGEVGRIWA AGGNAKVRNS ILGSAGLQVK W
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