| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0514 |
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| Symbol | |
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| ID | 4037303 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 550070 |
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| End bp | 551641 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637975889 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_582669 |
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| Protein GI | 94309459 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00131685 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.623408 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTCAGG CCATCCCCCT GACGGCGAGG CACCCTGCCC GTGCGATGCG GCATACTGCT
GCAACTTCGA CGTCACAATG CTTGTGCGAA TACCGTTGGC ACGCCCCACT TTTTCGTCGT
GCCGCTCCCA GGATTCCGGT CATGTCCAAC CCAGAACAAG GTCAACCCAC TCCTCCCAAT
CCGCCCACAC CGGGCGGTAA TACCCGGTCG CGTCGCCGCA CATGGATCGC CGGCGCAGTC
ATCGTCGTGC TAGCCGGTGC CGGCTGGTAC TGGCACGGCC ATCGCAAGGC CGCGCAGCAA
GCCGGCGCCA CGAGTGCCGG CGCGGCCAGT GGCGCTGCCG GGATGGGCGC GGGCAAGCGG
GGCCCCGGAG GCGCTAGCGG CGCCGGTGGC CCTGGCGGCC CGGGCGCGCA GCAGCGCTCG
CCAGTGGTGG TCAACCGCGT GACGCGCCGC AACATGGACG TGGTGCTGAA CGGCCTGGGC
AACGTGACGC CGGTGGCCAA CGTCACGGTG CGCGCGCAGG TCTCCGGCCC GCTGCTCAAA
GTGCTGTTCA AGGAAGGCCA GATGGTCAAG GCCGGCGACG TGCTCGCCGA AATCGACCCG
CGCCCGTTCC AGGCCACGCT CGACCAGGCT GTCGGCCAAC TCGCGCGCGA CCAGGCATTG
CTCCAGAACG CCCGCCTGGA CCAGAAACGC TACAAGACGC TGCTGGCGCA GGACTCGATC
TCGAGCCAGC AGGTAGATAC GCAGGACGCG CTGGTGCGCC AGTACGAGGG GACGGTCAAG
ACCGATCAGG GTAACGTCGA CAACGCGCGC ATCCAGCTTG GCTACACGCG CATCGTCGCG
CCGACGTCGG GCCGCATTGG CCTGCGTCAG GTCGACCCGG GCAATATCGT CAATCCAAGC
GACACCAACG GCATCGCCCT GATCACCCAG ATCCAGCCGA TCGCGGTGCT GTACACGATC
CCCGAAGACA ACCTGCCCTC GGTGCTGAAG AAGCTCAACG CCGGCGAGAA GCTGGCGGTG
CAAGCCTGGG ACCGCCAGAT GCGCAACCAG CTCGGTGAAG GCACGCTGCT GACCACGGAC
AACCAGATCG ACACCACCAC GGGCACCGTC AAGCTCAAGG CAATCTTCGC GAACACCGAC
GGCATGTTGT TCCCGAACCA GTTCGTCAAC GTGCGCACGC GCATCGACAC GCTGGAAGAC
GCCACCGTGA TCCCGATCGC GGCGATCCAG CGGGGCCAGC AGGGCACGTT CGTGTATGTC
GTGGATGACC AGAGCACGGT CAAGGTGCAG GTCGTCACGC TCGGGCCGGG CGACGGTAGC
CACAGCGCCG TGCTCAAGGG CCTGGAGCCC GGGCAGCGCG TGGTTGTGGA TGGCGCGGAC
CGCCTGAAGG AAGGCATGAC CGTCGAGGCG GTAGACCCGG CGGCACGTGC CGCGGCGCTC
ACGCCGGCGA GTTCGCCACG CGCCCGCGGC CGTCGCGGCG GCGGCGCGAG CGGCGTCCAC
GGTGCCAGCG GCGCGCGGGC AGCCAGCGGC GCCCATGGCT CGGGCGCGAG CCCGCAGCAG
GCACAGCCGT AA
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| Protein sequence | MLQAIPLTAR HPARAMRHTA ATSTSQCLCE YRWHAPLFRR AAPRIPVMSN PEQGQPTPPN
PPTPGGNTRS RRRTWIAGAV IVVLAGAGWY WHGHRKAAQQ AGATSAGAAS GAAGMGAGKR
GPGGASGAGG PGGPGAQQRS PVVVNRVTRR NMDVVLNGLG NVTPVANVTV RAQVSGPLLK
VLFKEGQMVK AGDVLAEIDP RPFQATLDQA VGQLARDQAL LQNARLDQKR YKTLLAQDSI
SSQQVDTQDA LVRQYEGTVK TDQGNVDNAR IQLGYTRIVA PTSGRIGLRQ VDPGNIVNPS
DTNGIALITQ IQPIAVLYTI PEDNLPSVLK KLNAGEKLAV QAWDRQMRNQ LGEGTLLTTD
NQIDTTTGTV KLKAIFANTD GMLFPNQFVN VRTRIDTLED ATVIPIAAIQ RGQQGTFVYV
VDDQSTVKVQ VVTLGPGDGS HSAVLKGLEP GQRVVVDGAD RLKEGMTVEA VDPAARAAAL
TPASSPRARG RRGGGASGVH GASGARAASG AHGSGASPQQ AQP
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