| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0090 |
|---|
| Symbol | |
|---|
| ID | 4036874 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 97974 |
|---|
| End bp | 98606 |
|---|
| Gene Length | 633 bp |
|---|
| Protein Length | 210 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637975462 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_582245 |
|---|
| Protein GI | 94309035 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTCGCG TCCTGATCGC CGACGATCAC GAGATCGTGC GTGCAGGTCT GCGCCAGTTC
ATTGCCGAGG AGCCTGACAT CGAGGTGACG GGCGAAGCTG GCAGCGGCGA CGAAGTGATG
GCGCAGTTGC GCGACAGCGA GTTCGACGTG CTCGTGCTCG ACATTTCCAT GCCGGATCGG
AATGGCATTG ACGTGCTGAA GCTGATCCGA CAGAGACTGC CTGCCTTGCC GGTGCTGATC
CTGTCGACCT ATCCGGAAGA CCAGTACGCC ATCAATCTGA TACGTGCGGG AGCATCCGGT
TACCTGACCA AGGAGTCGGC GCCGGACGAC CTCGTCAAGG CGATCCGCAC CGTTGCCCAG
GGACGACGTT ACGTGAGTCC GACCGTGGCC GACCTGCTGA TCGGCGGACT GGACAAGCCC
ACCGATCAGC CCGTGCACCG CACGCTCTCC GAGCGCGAGT TCCAGATCTT CTGCAAGCTG
TCACGCGGGC AATCCGTCTC GGTCATCGCT GACGAACTGT TCCTGAGCGT CAAGACGGTG
AGTACCTATC GTTCACGCAT CCTGGAGAAG ATGGGGATGA AGACCAATGC CGATCTGACG
TACTACGCCA TCAAGAACGG CCTGGTGGAG TAA
|
|---|
| Protein sequence | MIRVLIADDH EIVRAGLRQF IAEEPDIEVT GEAGSGDEVM AQLRDSEFDV LVLDISMPDR
NGIDVLKLIR QRLPALPVLI LSTYPEDQYA INLIRAGASG YLTKESAPDD LVKAIRTVAQ
GRRYVSPTVA DLLIGGLDKP TDQPVHRTLS EREFQIFCKL SRGQSVSVIA DELFLSVKTV
STYRSRILEK MGMKTNADLT YYAIKNGLVE
|
|---|
| |