| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0088 |
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| Symbol | |
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| ID | 4036872 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 94333 |
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| End bp | 97080 |
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| Gene Length | 2748 bp |
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| Protein Length | 915 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637975460 |
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| Product | methionine synthase (B12-dependent) |
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| Protein accession | YP_582243 |
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| Protein GI | 94309033 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.3983 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAGC AAAACCTGCC CCCGCGTCCG ATGCGCCTGT CCGGTCTGGA GCCGTTTACG
ATCGACGACG ACACGCTGTT CGTCAACGTT GGCGAGCGTA CCAACGTCAC CGGTTCGAAG
GCATTCGCGC GCATGATCCT GAACGGCCAG TTCGACGAAG CCCTGGCGGT GGCCCGCCAG
CAGGTGGAGA ACGGCGCGCA GATCATCGAC ATCAACATGG ACGAGGCGAT GCTCGATTCG
AAGGCGGCGA TGGTGCGCTT CCTGAATCTG ATCGCATCTG AGCCGGACAT CGCGCGCGTG
CCGATCATGA TCGATTCGTC GAAGTGGGAC GTGATCGAGG CGGGCCTGCG CTGTGTGCAG
GGCAAGGCCG TGGTGAACTC GATCTCGCTC AAGGAAGGTG AGGAACAGTT TCGCCACCAC
GCCACGCAGA TCCGCCGTTA TGGCGCGGCC AGCGTGGTGA TGGCATTCGA CGAGAAGGGC
CAGGCGGACA CGTTCGAGCG CAAGACCGAG ATCTGCAAGC GCAGCTACGA CTTCCTCGTG
AACGAAGTGG GCTTCCCGCC CGAGGACATC ATCTTCGATC CGAACATCTT CGCGGTGGCC
ACCGGTATCG AGGAGCACAA CAACTACGCG GTGGACTTCA TCGAAGCCAC GCGCTGGATC
AAGCAGAACC TGCCGTACGC CAAGGTCAGC GGCGGGGTGT CGAACGTGTC GTTCTCGTTC
CGCGGCAACG ACGTGGTGCG CGAGGCGATC CACACCGTGT TCCTGTACCA CGCGATCGCG
GCGGGCATGG ACATGGGCAT CGTCAACGCC GGCCAGCTTG GCGTGTACGA CCAGCTCGAC
CCGGAATTGC GCGAGCGCGT GGAAGACGTG GTGCTGAACC GTCGCGACGA CGCCACCGAT
CGCCTGCTGG AGATCGCCGA CCGCTTCAAG GGCGGTGGCA CGAAGCGGGA AGAGAACCTG
GCCTGGCGCG GCACGCCCGA GCAACCGGTG CCGGTGGGCG ATCGCCTGGC GCACGCGCTG
GTGCACGGCA TCACCACGTT CATCGTCGAG GACACCGAGG AAGTGCGCCA GCAGATCGCG
GCGCGCGGTG GCCGTCCCAT CGAGGTGATC GAGGGGCCGC TGATGGATGG CATGAACATC
GTCGGCGACC TGTTCGGCGC GGGCAAGATG TTCCTGCCGC AAGTGGTGAA GAGCGCCCGT
GTGATGAAGC AGGCCGTGGC GCATCTGCTG CCGTTTATCG AGGAAGAAAA GCGCCTGGTG
GCCGAGGCCG GCGGCGACGT GCGCGCGCGC GGCAAGATCG TGATCGCCAC CGTGAAGGGC
GACGTGCACG ACATCGGCAA GAACATCGTG TCGGTGGTGC TCCAGTGCAA CAACTTCGAA
GTGGTCAACA TGGGCGTGAT GGTGCCGTGC AACGAGATCC TGGCGCGCGC TAAGGTCGAG
GGCGCGGACA TTGTCGGGCT GTCCGGCCTG ATCACGCCGT CGCTCGAGGA AATGGCCTAC
GTTGCCTCGG AGATGCAGCG CGACGATTAC TTCCGCGTGA AGAAGATTCC GCTGCTGATC
GGCGGCGCCA CCACATCGCG CGTGCATACC GCGGTCAAGA TCGCGCCGAA CTATGAAGGC
CCGGTGGTCT ACGTGCCCGA TGCCTCGCGC TCTGTCAGCG TGGCGTCGAA CCTCTTGTCT
GACGAAGGCG CGGCGAAGTA TCTGGACGAG CTGAAGTCCG ACTACGACCG CATTCGCACG
CAGCACGCCA ACAAGAAGGC CACGCCGATG GTGTCGCTGG CCCAGGCGCG CGCCAACAAG
ACGCCGATCG ACTGGAGCGC CTATGTGCCG CCGAAGCCGA AGTTCATCGG CCGCCGCGTG
TTCCGCAACT ACGATCTGTC CGAACTGGCC AACTACATCG ACTGGGGCCC GTTCTTCCAG
ACCTGGGACC TGGCCGGCAA ATTCCCGGAC ATCCTAAACG ACGAGATCGT CGGCGAATCG
GCCCGACGCG TCTTCTCGGA TGGCAAGAGC ATGCTGGCTC GCCTGATCCA GGGACGCTGG
CTGACGGCCA ACGGCGTGAT GGCGCTGCTG CCGGCCAATA CGGTCAATGA CGACGACGTC
GAGATTTATA CCGACGAGTC GCGCAGCAAG GTCGCGCTGA CCTGGAACAA CCTGCGCCAG
CAGAGCGAGC GTCCGGTGGT GGATGGGGTG CGTCGCCCGA ACCGTTGCCT GGCTGATTTC
ATCGCGCCGA AGTCGAGCGG CGTGGCCGAC TACATTGGCC TGTTCGCGGT CACGGCCGGG
ATCGGCGTGG ACAAGAAGGA GGCGCAGTTC GAGGCCGACC ACGACGACTA CAGCGCCATC
ATGCTCAAGG CGCTGGCCGA TCGTCTGGCC GAGGCGTTCG CCGAATGCCT GCACGAGCGC
GTGCGCAAGG ATCTCTGGGG CTACGACGCC GCAGAGTCGC TGAACAATGA TCAGCTCGTC
GCCGAGGCGT ATCGCGGTAT TCGTCCGGCA CCCGGCTATC CGGCGTGCCC GGAGCACACG
GTCAAGGCGC CGATGTTCGC GTTCCTCGAT GCTGCCGACA TCGGCATGGG CATTACCGAG
GGGCTGGCCA TGACGCCGGC GGCATCGGTG AGCGGCTTCT ACCTGTCGCA TCCGGACTCG
ACCTACTTCA GCATTGGCAA GATCGGCCAG GACCAGCTCG ACGATATGGT GGCCCGTCGC
GGCGAGGACC GCCTTACGCT CGAGCGCGCT CTGGCGCCGA ACCTGTAG
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| Protein sequence | MSQQNLPPRP MRLSGLEPFT IDDDTLFVNV GERTNVTGSK AFARMILNGQ FDEALAVARQ
QVENGAQIID INMDEAMLDS KAAMVRFLNL IASEPDIARV PIMIDSSKWD VIEAGLRCVQ
GKAVVNSISL KEGEEQFRHH ATQIRRYGAA SVVMAFDEKG QADTFERKTE ICKRSYDFLV
NEVGFPPEDI IFDPNIFAVA TGIEEHNNYA VDFIEATRWI KQNLPYAKVS GGVSNVSFSF
RGNDVVREAI HTVFLYHAIA AGMDMGIVNA GQLGVYDQLD PELRERVEDV VLNRRDDATD
RLLEIADRFK GGGTKREENL AWRGTPEQPV PVGDRLAHAL VHGITTFIVE DTEEVRQQIA
ARGGRPIEVI EGPLMDGMNI VGDLFGAGKM FLPQVVKSAR VMKQAVAHLL PFIEEEKRLV
AEAGGDVRAR GKIVIATVKG DVHDIGKNIV SVVLQCNNFE VVNMGVMVPC NEILARAKVE
GADIVGLSGL ITPSLEEMAY VASEMQRDDY FRVKKIPLLI GGATTSRVHT AVKIAPNYEG
PVVYVPDASR SVSVASNLLS DEGAAKYLDE LKSDYDRIRT QHANKKATPM VSLAQARANK
TPIDWSAYVP PKPKFIGRRV FRNYDLSELA NYIDWGPFFQ TWDLAGKFPD ILNDEIVGES
ARRVFSDGKS MLARLIQGRW LTANGVMALL PANTVNDDDV EIYTDESRSK VALTWNNLRQ
QSERPVVDGV RRPNRCLADF IAPKSSGVAD YIGLFAVTAG IGVDKKEAQF EADHDDYSAI
MLKALADRLA EAFAECLHER VRKDLWGYDA AESLNNDQLV AEAYRGIRPA PGYPACPEHT
VKAPMFAFLD AADIGMGITE GLAMTPAASV SGFYLSHPDS TYFSIGKIGQ DQLDDMVARR
GEDRLTLERA LAPNL
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