| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcryo_2293 |
|---|
| Symbol | rho |
|---|
| ID | 4035368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter cryohalolentis K5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007969 |
|---|
| Strand | + |
|---|
| Start bp | 2820537 |
|---|
| End bp | 2821844 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637974772 |
|---|
| Product | transcription termination factor Rho |
|---|
| Protein accession | YP_581554 |
|---|
| Protein GI | 93007117 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1158] Transcription termination factor |
|---|
| TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.182483 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.345164 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATCTC TCATCTTATC AACTGCTAAC GACCTATCTA TGAATCTTAC TGAATTAAAG
AAAAAATCAA TCGCTGAGCT ACTGGCCATC GCTAAAGAGA TGGGTCTTGA TAATATGGCA
CGTAGCCGTA AACAAGACAT TATCTTTGCC ATTCTAAAAA CTCATGCCCG TAACGGTGAG
GCCATCTATG GTGATGGTGT GCTTGAAGTG CTCCCTGACG GTTTTGGTTT TTTGCGCTCA
TCTGAAGGCT CTTATTTAGC AGGTCCTGAT GATATCTATG TCAGCCCAAG CCAAATTCGC
CGTTTCAGTC TAAAAACTGG CGACAGTATC GCAGGCACGA TTCGTCCACC AAAAGACTCT
GAGCGTTATT TTGCACTATT AAAAGTCGGT GAAATCAACT TTGATACGCC AGACCGCTCA
CGTCATAAGC TTATCTTTGA AAACTTAACG CCATTATTTC CAACTGAGCA GCTAAAACTT
GAGCTAGGTA ACGGTACGAC TGAAGATTTG ACTGGTCGTA TTATCGACCT GATCGCACCG
ATTGGTAAAG GTCAGCGCTC TATTATTGTG GCACCGCCCA AAGCGGGTAA AACGATGCTG
CTACAGTCAA TAGCACAATC GATCACTCGT AATAATCCTG AATGCTACCT CATTGTGCTG
CTGATTGATG AGCGTCCAGA AGAAGTCACC GAGATGGAAC GTACTGTACG CGGTGAAGTG
GTTGCCTCAA CTTTCGATGA GCCGCCACAG CGCCATGTAC AAGTGGCTGA AATGGTCATT
GAAAAAGCCA AGCGCTTGGT TGAGCACAAG CAAGACGTGG TCATTCTGCT TGACTCGATT
ACCCGTCTTG CCCGCGCCTA TAACACCGTT ATTCCTTCAT CAGGTAAAGT GTTGACCGGT
GGTTTGGATG CCAATGCGTT AGAGCGCCCA AAACGATTCT TTGGTGCTGC TCGTAATATT
GAAGAAGGCG GCAGCTTGAC CATTATCGCC AGTGCCCTTA TTGATACTGG TAGTAAAATG
GACAGCGTTA TCTTTGAAGA ATTCAAAGGT ACCGGTAACC AAGAGATTAC CCTTGAGCGT
GATCTGGCAG AAAAGCGTGT CTTCCCTGCC ATTAATATCA AAAAATCGGG TACACGCCGT
GAAGAACGTC TGCTTGATGA AGATAAGCTG CGTAAAGTTT GGATCCTGCG TAAATTGCTA
CAGCCGATGG ATGGTGTACA AGCAACTGAG TTCTTATTGG ACCGCTTAAA AGAAGCCAAA
ACCAATGATG AATTTTTTGA GCAAATGAAG CGTAAATCAC AAAATTGA
|
|---|
| Protein sequence | MASLILSTAN DLSMNLTELK KKSIAELLAI AKEMGLDNMA RSRKQDIIFA ILKTHARNGE
AIYGDGVLEV LPDGFGFLRS SEGSYLAGPD DIYVSPSQIR RFSLKTGDSI AGTIRPPKDS
ERYFALLKVG EINFDTPDRS RHKLIFENLT PLFPTEQLKL ELGNGTTEDL TGRIIDLIAP
IGKGQRSIIV APPKAGKTML LQSIAQSITR NNPECYLIVL LIDERPEEVT EMERTVRGEV
VASTFDEPPQ RHVQVAEMVI EKAKRLVEHK QDVVILLDSI TRLARAYNTV IPSSGKVLTG
GLDANALERP KRFFGAARNI EEGGSLTIIA SALIDTGSKM DSVIFEEFKG TGNQEITLER
DLAEKRVFPA INIKKSGTRR EERLLDEDKL RKVWILRKLL QPMDGVQATE FLLDRLKEAK
TNDEFFEQMK RKSQN
|
|---|
| |