| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcryo_1717 |
|---|
| Symbol | |
|---|
| ID | 4034597 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter cryohalolentis K5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007969 |
|---|
| Strand | + |
|---|
| Start bp | 2125436 |
|---|
| End bp | 2127148 |
|---|
| Gene Length | 1713 bp |
|---|
| Protein Length | 570 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637974182 |
|---|
| Product | nitrogen metabolism transcriptional regulator, NtrC, Fis family |
|---|
| Protein accession | YP_580978 |
|---|
| Protein GI | 93006541 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.336795 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAGT ATAATGACAC CCAATCTCTT ACAAGCAATG AGCGAACGCC AATGGTCACG
GTCAATAACA GTCCTGATAA TGAGCCTGCC ACTTTGTGGC TCATTGATGA TGATGCGGCG
CTGCGTATGG TACTTGCAGA TACTTTTGAA GACGCTGGAT TGACGGTTAT CAGCTTTACC
CAAGCACAAG CAGCATGGAC ACGCCTCAAT GATATTCTAG AATCGTCAGA GTCAATCGCC
TTGTTACCTG ATGTGATATT GACCGATATT CGTATGCCGA TGATGGATGG TCTGTCGTTT
AGTGACTGGG TACACAAGCA CTTTCCTAAG CTTCCGATTG TCATTATGAC AGCGCATTCA
GACCTTACTT CTGCCATTAG CAGCTATCAG ACTGGTGCAT TTGAATATCT GCCCAAGCCG
TTTGATTTAG ATGATGCGGT CGCAACGATT TATAAAGCCA TTAATTATCA GCCGAATCTA
GTCATATCAA ACCATTCGAT CGAGTCTAAT ACGAATGTAA GTACCGATAC CAAAGAACAG
CCTGTGAACA AACCAAATGC AGCCAAATCA GCTAGAAAAA CCCCTAAAGC TGCTGAAAGT
AAAACTCATG AAAAACCCAA ACCCCAAACC AATAACAATC CAAGCGGCAT CATTGGTCAA
TCACAAGCCA TGCAAACGGT ATTTCGTGCC ATTGGTAGAC TTGCGCACTC ACCGATTACC
GTTTTAATCA CTGGTGAATC AGGTACAGGT AAAGAGTTGG TCGCTAGCGC TTTACATCAG
CACTCACCGC GACACAATAA AACCTTTATT GCACTAAATA TGGCAGCAAT TCCCCATGAT
TTGATTGAGT CTGAATTGTT TGGTCATGAA AAAGGCGCAT TCACTGGCGC CACAACTTCA
CGCCAAGGTC GTTTTGAGCA AGCAGATGGC GGCACGTTAT TTTTAGATGA AATCGGTGAC
ATGCCTTTTA GTACCCAAAC GCGGCTGCTA CGAGTGCTGG CAAATGGCGA ATTTTTTCGC
GTGGGTGGTC AGCAGCCCGT CAAAGTAGAT GTACGCATTA TTGCCGCTAC CCATCAAAAC
TTGGAAGAAT TGGTCAAACA GGGTAAATTC CGTGAGGATC TATTTTATCG CCTGAATGTC
ATTCGCCTGC CATTGCCGCC CTTACGGACT CGCCGCGAGG ACGTACCAGC ATTAACCACT
TATTTTATGC AGCGCGCTGC TGAGCAGATG AATACGGCAC CAAAACAGTT ACATCCGGCA
GCAATGCAAA TGATGCAGTC TTTTGAATGG CGCGGTAATG TCCGTCAACT TGAGAATGTC
TGTCTCTGGC TGACAGTAAT GGCGACTGGC GACACCGTTA TGATCGATGA CTTGCCTCCA
GAGTTGCTCG AAAACATCTC CTCTACTCTA AACAATCAAC AGCAGCATGT ATCCTCACAA
GACGCTATTG AAAATAATCA TCTACAAAGT CAGGATACTT TTGGCACCCA AAGCTGGCAA
CAAGCTTTAG GTATTTGGGC GAAGCAGTCA CTACAAACTG GCGCAACCGA TATTTTACAG
ACAGCAACAC CTGAGTTTGA ACGGGTCTTG CTAACCGCAG CGCTCCATCA TAGCGGCGGC
AAAAAGATAG CTGCTGCCAA TTTACTTGGC TGGGGACGCA ATACGCTGAC ACGTAAATTA
CAACAGCTGA ACCTCTCATC ATATCAAGAG TAA
|
|---|
| Protein sequence | MTQYNDTQSL TSNERTPMVT VNNSPDNEPA TLWLIDDDAA LRMVLADTFE DAGLTVISFT
QAQAAWTRLN DILESSESIA LLPDVILTDI RMPMMDGLSF SDWVHKHFPK LPIVIMTAHS
DLTSAISSYQ TGAFEYLPKP FDLDDAVATI YKAINYQPNL VISNHSIESN TNVSTDTKEQ
PVNKPNAAKS ARKTPKAAES KTHEKPKPQT NNNPSGIIGQ SQAMQTVFRA IGRLAHSPIT
VLITGESGTG KELVASALHQ HSPRHNKTFI ALNMAAIPHD LIESELFGHE KGAFTGATTS
RQGRFEQADG GTLFLDEIGD MPFSTQTRLL RVLANGEFFR VGGQQPVKVD VRIIAATHQN
LEELVKQGKF REDLFYRLNV IRLPLPPLRT RREDVPALTT YFMQRAAEQM NTAPKQLHPA
AMQMMQSFEW RGNVRQLENV CLWLTVMATG DTVMIDDLPP ELLENISSTL NNQQQHVSSQ
DAIENNHLQS QDTFGTQSWQ QALGIWAKQS LQTGATDILQ TATPEFERVL LTAALHHSGG
KKIAAANLLG WGRNTLTRKL QQLNLSSYQE
|
|---|
| |