| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcryo_0223 |
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| Symbol | |
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| ID | 4035415 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter cryohalolentis K5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007969 |
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| Strand | + |
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| Start bp | 267264 |
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| End bp | 268991 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637972669 |
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| Product | sigma-54 (RpoN) |
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| Protein accession | YP_579491 |
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| Protein GI | 93005054 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00293155 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTATGT CGTTCGGATT GGCGACCACG CTAAGCACCT CACAAAAACT GACCCCGCAA
ATGCAGCAAG CTATTAAATT GCTGCAGCTC TCTAGTCTTG AGCTGGCGCA AGAGGTTCAA
GCGAAGCTGG ACAGTAATCC ATTACTAGAA CGCATCGAAA ACGATGAAGA TGAGTACGAA
AGTATGGATA AAGACGCATT AGATGAGTTT GGCGAGCCAC TAACGTTAGA CAGTTGGAAT
CAGAGTACTG CTTCTGATAC GTTTTCTATA TCTCCTCCAT CAAATAATGA AGATGTATTT
GACTATGATG ACAGTACTAG CGATAGCCTT ACTAATGATA GTCTAGATAA ATTGCAGCAA
GACGGTTTTG ATACGGATGC CATCGACAGT TATACGCTTG AAGACTTTGA AGGCTCAAAC
TATGAAAGCT CAAACTATGA AAGCTCAAAC TATGATAGCC CTAATGCAGA TTATGACGGT
TTTAACACCG CCAGTACTGG TTCAGGCAGC ATATCAGCGC GTCCAGATTC TGAGGACTTT
GATCGCTATG AGGGCAGTAC CAATGCGACG ATTCAAGACC ATGTGCGTTG GCAGCTGAAT
TTTAAACGTC TCTCAGAGAC AGATACTCTT ATCGCTGAGT ATTTGATGGA TTCTATGGAC
GACATGGGTT TTGTACGGCT CGATATCGAG GAGTTGCTAC AGAGCTTTGA TACCATTGCG
AGCTTTTATC AGTGGGATCA GCGCGTTGAG CAGGATGAAG TAATGGCAGT ACTGCGCATG
ATTCAATCCT GTGATCCGCT TGGGGTTGGC GCACGAAATC TAAGTGAATG CTTAGCGATT
CAGCTATCTA AGCTCGACAC TGACACGCCT TATCTAAAAC AAGCCCAAGC GCTCTTATCT
GCCAGTGAGC ATCTGGTCAG TAATAATATT AAAGCCTTAA CTGAGCGCAC AGGACTTGCG
GCTCATGAGA TTACCCCTGC GCTTACGCTG TTGCGTACTT TAAATCCTTC ACCAGGATTG
CTATTTCAAA GCCGCCAACC GGATTATACT CAGTCGCCCG ACAGCTATGA TATCCCTGAT
GTATTGGTGA CGCCTATCCG TCGCCATGAT GCTCATCAAA ACACCACCAT ATCTACTCAA
GAAGATGGCT GGCAGGTACG TCTAAACCCT GAAACCTTGC CAAAACTACG AGTCAACCAA
GAATATGCCA ACCTTGTTAA GCGCGGCGAT AATAGCCCTG ATAATCAATA TCTGCGTGAA
AATCTCACTG ATGCGCGCTT ATTTATTCGC AGTATCGAAG AGCGTAATCA GAACCTTTTA
AAGGTAGCCA CTAGTATCGT GCGCTACCAG CAATCTTTTT TGCAGTATGG CGCCACTGCT
ATGCAACCGC TTATTTTAAA GGTGATTGCA GACGAAGTTG ATTTACATGA ATCAACGGTC
TCGCGCCTGA CCACTAGCAA GACCATTTTG ACACCGCAAG GACTGTTTTC GCTCAAGCAT
TTCTTTTCAT CACATGTTAG CAGCAGCGAT GGCGATATCT CATCAACTGC TATCAGTGCG
ATGATTAAGC AGCTTATCGC TGATGAAGAG CCCAAAAAGC CATTGTCTGA TAGTAAGATA
AAAGATTATT TGTTGGCAGA AGGTATCGAT ATTGCCAGAA GAACAGTCGC CAAATATCGT
GAAGCAATGA ATATTGGCTC ATCTACACAG CGCAAACAAA AATATTAA
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| Protein sequence | MSMSFGLATT LSTSQKLTPQ MQQAIKLLQL SSLELAQEVQ AKLDSNPLLE RIENDEDEYE
SMDKDALDEF GEPLTLDSWN QSTASDTFSI SPPSNNEDVF DYDDSTSDSL TNDSLDKLQQ
DGFDTDAIDS YTLEDFEGSN YESSNYESSN YDSPNADYDG FNTASTGSGS ISARPDSEDF
DRYEGSTNAT IQDHVRWQLN FKRLSETDTL IAEYLMDSMD DMGFVRLDIE ELLQSFDTIA
SFYQWDQRVE QDEVMAVLRM IQSCDPLGVG ARNLSECLAI QLSKLDTDTP YLKQAQALLS
ASEHLVSNNI KALTERTGLA AHEITPALTL LRTLNPSPGL LFQSRQPDYT QSPDSYDIPD
VLVTPIRRHD AHQNTTISTQ EDGWQVRLNP ETLPKLRVNQ EYANLVKRGD NSPDNQYLRE
NLTDARLFIR SIEERNQNLL KVATSIVRYQ QSFLQYGATA MQPLILKVIA DEVDLHESTV
SRLTTSKTIL TPQGLFSLKH FFSSHVSSSD GDISSTAISA MIKQLIADEE PKKPLSDSKI
KDYLLAEGID IARRTVAKYR EAMNIGSSTQ RKQKY
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