| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcryo_0076 |
|---|
| Symbol | |
|---|
| ID | 4034202 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter cryohalolentis K5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007969 |
|---|
| Strand | + |
|---|
| Start bp | 87911 |
|---|
| End bp | 88990 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637972518 |
|---|
| Product | tRNA pseudouridine synthase B |
|---|
| Protein accession | YP_579344 |
|---|
| Protein GI | 93004907 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.225671 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.908993 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTATCG CATCTACGCA AGCGGATAAA AAGTCTAGTA ATCACCCTAA CAAGATTAAA
GTTTCTGGTG TTATTTTAGT CGATAAGCCT CAAGGTATGA CTTCTCAGCA AGTGGTTTCA
AAGGTAAAAT ATTTATTTAA ATCGCCTAAC CATGACAGCA AGAAAGCAGG TCATACCGGC
ACACTTGATC CAATGGCAAC AGGATTATTG CCTATCTGTT TGGGTGAAGC GACCAAGTTC
AGTCACTATC AGCTTGATGC GGATAAATCT TATCAAGCAA CCATTCTACT TGGTAGTCAA
ACTGATACCG GTGATGCCGA TGGGCAAGTC ACTGCTGAGG CACCGATTCC AGCGTTTGAT
GATGCACTGT TAGACAAAGT CGCTCAGCAG TTTTTAGGTG CCCAGCAGCA AATTCCACCG
ATGTATTCTG CCTTAAAAAA AGATGGCAAA AAACTCTATG AATATGCTCG TGCTGGTATA
GAAGTAGACC GCCCGCCAAG AGACATTGTC CTTAAAGCCA TTGAGTTAAA AGCAATCGAT
GAGCAGCAAA TCCAGTTAAC AGTAACTTGT TCAAAAGGCA CTTATGTGCG TGTATTGGCA
GAAGATATTG CTAAAGCGAT GGGTACACTT GGACATTTAA CGGCATTGCG CCGTCTACAA
GTGGGTGATT TTAAAATCGA TGAGACAATT GCGCTTGCAG ATTTAGAAGC ATTGCCATTA
GAACAACGTC AGACATATCT ATTGCCAGTA GATGCCTGCA TTGATATTAG TGCTGAGCTG
TCACTATCGT CAGAGCAGTG CGAGCGCGTA CAAATGGGTC AACGCTTGAA TGTTATCGAT
CAGTTGACTG ATGATGTGCA AAGTTATATC ACAACAGCTA TCGATCAGCA TTTAGCTGCT
AACAATAACA GCGCTGCTGA TAGTCAAAAT ATAGAAGATA CTAACGATGA TAACGAGCAG
CAATTGGTAC ATGAAATACC GATAGATATT CGTCTTATTG ATGAGCAGGG TGCGTTTATT
GGTTTAGGGG CAGTGAGCTT AAATGGTCGA TTGCAACCTA AAAAGCTGAT TCAGTTGTAA
|
|---|
| Protein sequence | MSIASTQADK KSSNHPNKIK VSGVILVDKP QGMTSQQVVS KVKYLFKSPN HDSKKAGHTG
TLDPMATGLL PICLGEATKF SHYQLDADKS YQATILLGSQ TDTGDADGQV TAEAPIPAFD
DALLDKVAQQ FLGAQQQIPP MYSALKKDGK KLYEYARAGI EVDRPPRDIV LKAIELKAID
EQQIQLTVTC SKGTYVRVLA EDIAKAMGTL GHLTALRRLQ VGDFKIDETI ALADLEALPL
EQRQTYLLPV DACIDISAEL SLSSEQCERV QMGQRLNVID QLTDDVQSYI TTAIDQHLAA
NNNSAADSQN IEDTNDDNEQ QLVHEIPIDI RLIDEQGAFI GLGAVSLNGR LQPKKLIQL
|
|---|
| |