| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3905 |
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| Symbol | ligC |
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| ID | 4032661 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | - |
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| Start bp | 4282780 |
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| End bp | 4283805 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637972281 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_579055 |
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| Protein GI | 92119326 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.603635 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAGCGC GTTCCGTCGC TACTATTCCC GTAGGCCGAG AGTGGCAGTA CGAGCCGAAA
TGGGATGGAT TTCGTTGCCT GCTGGCGCGC GATGCCGACA CCGTGGCAAT GCATTCGAAA
TCAGGGCAGA ATCTGGGCCG CTACTTTCCG GAAGTGGTCG CCGCGGCACT CTCCTTGCGC
GAAAAAAGCT TCGTCCTCGA TGGCGAAATT ATCGTTCCCG TCGGGCGTGG ATTTTCCTTC
GACGACCTTC TGCAGCGCCT CCATCCCGCT GCGAGCCGGG TAAAGAAGCT TTCGGAGCAA
ACGCCGGCGT TGTTTCTTGC GTTCGATCTC CTGAGGAAAG GCAAGACCGA GCTTGCGGAC
GAACTCCTAC CCAAGCGGCG CTCGCAACTC GAAGACTTCG CAGACCGTCA TTTCTCGAGC
GAGAACCTCT TTCGTCTTTC TCCGGCCAGC CTGAAGCTGA CGGACGCCGA ACGCTGGCTT
GCCTCGGCAG GAGGCGGCAG CGACGGCGTC ATCGCGAAAC GGCTCGATCT TCCGTACCAA
GCCGGCAACC GCGACGGTAT GCAGAAGATA AAGTGCTATC GCAGCGCTGA TTGCGTGATC
GGCGGCTTTC GGTACGGGGA AAACCCCCAG GGCGGCCGGA TGGTCGTCGG ATCCGTGCTC
CTCGGATTGT ACGACGCCGA CGGCCTGCTT CACCACGTGG GATTTTCGTC CGGGATCAAA
GCGAAGGATA AGCCCGCCCT TACCGACAAG CTCGAGGCCG TAGCAAGCGA TCGGAGCTTT
ACGGGAAACG CCCCAGGCGG TCCGAGCCGA TGGTCGACAA AACGTTCGTC CGAATGGCAG
CCGTTGAAGC CGAAATACGT GGTTGAAGTT TCCTATGATC ACTTCACCGG CGGACGCTTC
CGGCATGGCA CGTCGATCCT GAGGTGGCGT CCGGACAAGA AACCGCGCCA GTGCACCTTC
GAACAGGTGC ACCAAAAAAT CGACCGCCGG CTGATGGCTG CCATCACCTC AACCAAACAT
ATCTGA
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| Protein sequence | MEARSVATIP VGREWQYEPK WDGFRCLLAR DADTVAMHSK SGQNLGRYFP EVVAAALSLR
EKSFVLDGEI IVPVGRGFSF DDLLQRLHPA ASRVKKLSEQ TPALFLAFDL LRKGKTELAD
ELLPKRRSQL EDFADRHFSS ENLFRLSPAS LKLTDAERWL ASAGGGSDGV IAKRLDLPYQ
AGNRDGMQKI KCYRSADCVI GGFRYGENPQ GGRMVVGSVL LGLYDADGLL HHVGFSSGIK
AKDKPALTDK LEAVASDRSF TGNAPGGPSR WSTKRSSEWQ PLKPKYVVEV SYDHFTGGRF
RHGTSILRWR PDKKPRQCTF EQVHQKIDRR LMAAITSTKH I
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