Gene Nham_3693 details

Gene Information

• Locus tag: Nham_3693
• Symbol: def
• ID: 4030679
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrobacter hamburgensis X14
• Kingdom: Bacteria
• Replicon accession: NC_007964
• Strand: +
• Start bp: 4066289
• End bp: 4066816
• Gene Length: 528 bp
• Protein Length: 175 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637972103
• Product: peptide deformylase
• Protein accession: YP_578879
• Protein GI: 92119150
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTATTC GCGAAATAAT CATTCTGCCG GACAAGCAGT TGCGTCTGGT TTCGAGGCCG 
ATCGAAACGG TCACGCCGGA GATCCGCAAG CTTGCCGACG ACATGTTCGA AACCATGTAC 
GACGCACCGG GCATCGGGCT TGCCGGCATC CAGATCGCGC AACCGTTGCG CATCATCACC 
ATGGACCTCG CCAGGCGCGA CGAGGAGGGC GAACTCACGC CGCGGCCGCG CATCTTCATC 
AATCCGGAAA TCCTGTCGGC GTCCGAGGAA CTCTCGACCT ACGAAGAGGG CTGCCTGTCG 
ATCCCCGAAT ATTACGAGGA GGTCGAACGG CCGGCGCGGG TGCGTGTTCG CTTCACCGAT 
CTCGATGGCA AGGTGCACGA GGAGGATGCC GAGGGGATCT ACGCCACCTG CATCCAGCAC 
GAGATCGACC ATCTCAACGG CGTGCTGTTC GTCGATCACA TCTCGAAACT GAAACGCGAC 
CGCGTGGTGA AGAAGTTCAC CAAGGCTGCG AAGCTCGCCG CGAAATAG 

 

Protein sequence

MAIREIIILP DKQLRLVSRP IETVTPEIRK LADDMFETMY DAPGIGLAGI QIAQPLRIIT 
MDLARRDEEG ELTPRPRIFI NPEILSASEE LSTYEEGCLS IPEYYEEVER PARVRVRFTD 
LDGKVHEEDA EGIYATCIQH EIDHLNGVLF VDHISKLKRD RVVKKFTKAA KLAAK