| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3686 |
|---|
| Symbol | |
|---|
| ID | 4030672 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 4057570 |
|---|
| End bp | 4058952 |
|---|
| Gene Length | 1383 bp |
|---|
| Protein Length | 460 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637972098 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_578874 |
|---|
| Protein GI | 92119145 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCGG GGCAGCCCCG GCCCCGCCGT GTGCGGAGGG CAAGGCACGA TGCGAACACC
GGCATGGAGA CTGGCGCTGC TGTTCTGCGC GGTGCAATTC ACTGCCGCAC TGCCGCACTG
CCGGCTCCGG CACGCGCCGT CACCGAGATC GCGTGGTGGC ACGCGATGTC CGGCGAACTC
GGCCGGCGGC TCGGACGGCT CGCCACCGAA TTCAACGGGT CTCAATCCGA GTACCGGATC
GTGCCGACCT ACAAGGGCAA CTACACCGAG ACGGTGACCG CGGCGATCTT CGCGTTCCGC
TCGCGGAGCC AGCCGGCGAT CGTGCAGGTC AACGAAATCG CCACCGGCAC CATGATGGCG
GCTCAGGGGG CGATCTATCC GGTCTTCGAG CTGATGCGCG ACGAGGACGA AGCGTTTTCC
CCGGCGGCCT ATCTTCCGGC CATCACGGGA TACTATGCCG ATGTCGCGGG CAACCTGCTG
TCGTTCCCGT TCAATGTCTC GACCCCCATC CTCTATTACA ACAAGGACCT GTTCCGCACC
GCCGGTCTTG ATCCCGAGAG GCCGCCGAAG ACCTGGCCGG AGGTCGGCGA AGCCGCGAAG
AGGCTGCGCG AGGCCGGGGT CGCTTGCGGC TTCACCACGT CGTGGCCGTC ATGGGTCAAT
GTCGAGAGTT TTCTCGCCTT GCACAATCTG CCGATCGCAA CGCGCGCCAA CGGGTTCGGC
GGGCTCGACG CCGTCCTCAT TTTCAACAAT CCACTGATGG TCCGCCACGT TGCCCAACTC
GCCGAATGGC AGAAGACCGG AATTTTCGAC TATAGCGGCC GGGGAACGGC TGCCGAGCCT
CGTTTCCAGC ATGGCGAATG CGGCATCTTC ATGGGCTCTT CGGCGACCCG CGCGGATATC
ATCGCCAATT CCAAATTCGC CGTCGGCCAA GGCATGCTGC CGTTTTGGCC GGATGTCGAA
GGCGCGCCGC AGAACACCAT CATCGGCGGC GCCACATTAT GGGTGCTGCG CGATCGCCCG
CGCGAGGAAT ACAAGGGCGT CGCAAAATTC TTTGCCTATC TGTCGAAGCC CGAAGTACAG
GCAGCCTGGC ACCAGCACAC CGGCTACCTG CCGATTACCC GCGCGGCATT CGATCTCACC
CGCGCGCAGG GCTTTTACGA TCGCAATCCG GGGTCCGCGA TCGCGATCGA ACAGATGACG
CTGAAGCCGC CGACCGAGAA TTCAAGGGGG TTGCGGCTCG GGTCGTTCGT TCTGATCCGC
GCCGTCATCG AGGACGAACT CGAACAGGCC TTCAGCGGCA AGAAGAGCGC GCAGGCCGCG
ATGGATTCGG CGGTGGCGCG CGGCAACAAG CTGCTGCGCC AGTTTGAGCG CACCAATCCG
TGA
|
|---|
| Protein sequence | MTAGQPRPRR VRRARHDANT GMETGAAVLR GAIHCRTAAL PAPARAVTEI AWWHAMSGEL
GRRLGRLATE FNGSQSEYRI VPTYKGNYTE TVTAAIFAFR SRSQPAIVQV NEIATGTMMA
AQGAIYPVFE LMRDEDEAFS PAAYLPAITG YYADVAGNLL SFPFNVSTPI LYYNKDLFRT
AGLDPERPPK TWPEVGEAAK RLREAGVACG FTTSWPSWVN VESFLALHNL PIATRANGFG
GLDAVLIFNN PLMVRHVAQL AEWQKTGIFD YSGRGTAAEP RFQHGECGIF MGSSATRADI
IANSKFAVGQ GMLPFWPDVE GAPQNTIIGG ATLWVLRDRP REEYKGVAKF FAYLSKPEVQ
AAWHQHTGYL PITRAAFDLT RAQGFYDRNP GSAIAIEQMT LKPPTENSRG LRLGSFVLIR
AVIEDELEQA FSGKKSAQAA MDSAVARGNK LLRQFERTNP
|
|---|
| |