Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nham_3539 |
Symbol | |
ID | 4030522 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrobacter hamburgensis X14 |
Kingdom | Bacteria |
Replicon accession | NC_007964 |
Strand | - |
Start bp | 3894075 |
End bp | 3895283 |
Gene Length | 1209 bp |
Protein Length | 402 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637971951 |
Product | secretion protein HlyD |
Protein accession | YP_578728 |
Protein GI | 92118999 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAAGAT TTAATTCACG ACTGACGTCC GTCGCTTTGT TGATCGCCGG ATTGTCGCCG CTGCTTGGCG GCTGCGACGA GCCCGTCACC GCGGAAGCCT CGACCAGCGC GATCACCCCG GAAGTCAGCG TCGTTACGGT GGTTCCGAAG CCGCATGCAA TGGTGCGCGA ACTGCCGGGC CGCATCGCGC CGCTGCGCGT TGCCGAGGTG CGCCCCCGCG TCTCCGGCAT TATCACCGAG CGCCTGTTCG AGCAGGGCAG CGAGGTCAAG GCTGGCGATC CGTTGTATCA GATCGATTCA AAACCGTTCG CGGTCGAATT GCAGGCGGCG GAGGCAGCGC TGGCAAAGGC CGACGCCGTA TTCGAGCAGG CGTCGCATCA TGCGAGGCGC ATCGAAAAAC TGACGGCCCG GCACGCCACC TCCGAGGCCG AAAACGAGAA AGCGATCGCC AACATGCGTC AGGCCGAGGC CGATGTCGCC GGTCGCCAGG CGGACCGCGC GCGGGCGCGG CTCCATCTCG ATTACACCAC CATCCGGGCG CCGATCGGCG GCGTGGTCGG CGCGGCCCAG GTCACCGAGG GCGCGCTCGT CGTCCAGAAC GAGACGGCCA GCCTGACCAC GGTGCAACAA CTCGACACCA TCTACGCCGA CTTCACCCAG TCGGTGAGCG AACTCAACAG CCTGCGCCGT GCATTCGAGA GCGGCGAACT GGAGCGCATC GCGCCGGGCG CGGCGAAAGT CCGTCTCGTG CTCGACGATG GAACGCTCTA CCCGCTGCCC GGAAAATTCC TGTTTTCCGA AGCCAAGGTC GATGCCTCGA CCGGGCAGGT GACGCTGCGC GGCGAATTTC CGAATCCGAA GCGCGAACTG CTGCCGGGTA TGTACGTCCG CGTGCTGCTA GAGCAGGGCG TTGACAGCGA TGCGATCGCC GTTCCGCAGC AGGCGGTGCA GCGCGACACC AGCGGCGGCA GCGAGGTCTT CGTCGTCAGG GACGACGATC GCGTGATCGC GCGCCCGATC CGGACAGCGT CCGTCCAGGA CGGGCTGTCG ATGGTCAGCC AGGGACTCAA GGCCGGCGAC CGCGTCGTGG TCGAGGGCTT CCAGAAATTC ACCGCCGGCG ACAAGGTTCG CACCGTGATG TGGGCGGAAG CCGATGCTTC GCGGGAGACC GGAGCGCTGA CGGGCGCCAC AGCGGTTGCC CGGCAGTAG
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Protein sequence | MPRFNSRLTS VALLIAGLSP LLGGCDEPVT AEASTSAITP EVSVVTVVPK PHAMVRELPG RIAPLRVAEV RPRVSGIITE RLFEQGSEVK AGDPLYQIDS KPFAVELQAA EAALAKADAV FEQASHHARR IEKLTARHAT SEAENEKAIA NMRQAEADVA GRQADRARAR LHLDYTTIRA PIGGVVGAAQ VTEGALVVQN ETASLTTVQQ LDTIYADFTQ SVSELNSLRR AFESGELERI APGAAKVRLV LDDGTLYPLP GKFLFSEAKV DASTGQVTLR GEFPNPKREL LPGMYVRVLL EQGVDSDAIA VPQQAVQRDT SGGSEVFVVR DDDRVIARPI RTASVQDGLS MVSQGLKAGD RVVVEGFQKF TAGDKVRTVM WAEADASRET GALTGATAVA RQ
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