Gene Nham_3514 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_3514 
Symbol 
ID4030784 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand- 
Start bp3868610 
End bp3869065 
Gene Length456 bp 
Protein Length151 aa 
Translation table11 
GC content65% 
IMG OID637971926 
Productbiopolymer transport protein ExbD/TolR 
Protein accessionYP_578703 
Protein GI92118974 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0848] Biopolymer transport protein 
TIGRFAM ID[TIGR02801] TolR protein 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.262132 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGATGA ATCCGGCAGC GCCCTCCTCG GGCGGCGCAG GGCGGCGCGG GCGGCGGCGG 
TCACAGCCGA TGGCCGAGAT CAACGTCACG CCGATGGTCG ACGTCATGCT GGTGCTTCTG 
ATCATCTTCA TGGTGTCGGC GCCGCTTTTG ACCGTCGGCG TGCCGCTCGA TCTGCCGCAG 
ACCCAGGCCA AGAGCCTTGA GCAGGACAAG ACGCCGCTGC AGTTGTCGGT CGACGTCCAG 
GGACGGGTTT TCATCAACGA CACTGAAGTC ACGATGGCCG ATCTGGTGCC GAAGCTGAAG 
GCGATTACCG ATGCCCGCGG CGGCCTCGAC GAGCGCATCT TCATGCGCGC CGACAAGAAG 
GCCGATTACG GCACGGTGGC GCGGGTGATG GGTCAGCTCT CTGGCGCGGG ATTCAAGCGC 
CTCGCCTTGG TGACGGAAGT GGATCAGGGA ACGTAG
 
Protein sequence
MAMNPAAPSS GGAGRRGRRR SQPMAEINVT PMVDVMLVLL IIFMVSAPLL TVGVPLDLPQ 
TQAKSLEQDK TPLQLSVDVQ GRVFINDTEV TMADLVPKLK AITDARGGLD ERIFMRADKK 
ADYGTVARVM GQLSGAGFKR LALVTEVDQG T