Gene Nham_3508 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_3508 
Symbol 
ID4029439 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp3860565 
End bp3861575 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content65% 
IMG OID637971920 
ProductTPR repeat-containing protein 
Protein accessionYP_578697 
Protein GI92118968 
COG category[S] Function unknown 
COG ID[COG1729] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR02795] tol-pal system protein YbgF 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.024508 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCGCTTTC GATGTGACGT TCATTTCAAT CGTCAGGCCA AAATGTCATC CATAGCCCCG 
ATGCTTGCGC GCGCAGCGGC CGTTGCCGCG ACGCTTTTGC TGTCGTCACA CGCCTTCGCG
CAATCCGACT TCGGCGACCC TGAAATCCGC ATTCAGCAAC TGGAAGAGCA ACTGCGAACG
CTGACCGGAC AGAACGAGGA ACTGCAGCAC CGGAATCGAA TGCTCGAACA ACAGTTGCAG
CAGTTGCAGC AGTTGCAGCC GGGAGCCGCG CCGCCCGGCG TCGCGGCGGC TGCGCCGGTG
CAACCAAGCC CGGGTTACCG CCAGCCGGCC TACGATCAGC GCGGAGGGGA GGGGCCCGTC
GCGCAGGAAC AGGCCGTGAC CGTGCCTGCG CAAGGCCATC GCGGCGATGC TTTCGATCCC
AGCCAGAATC CCAACGCGCC GGGTGTCCCG CGCGCGCTGG GCGGCGGACA GATGCCGATG
CCGGCGGAAG CCGCGGGCTC GCCCGGAGGT CGGGAAGCCG GCGCACCGCT CGACCTTGCC
AATACCAGTC CACGGCGTCC GGGGGGGTAT CCGACGCCCG ACTCCGCTCC GCCCAATACC
GGCGGTTTGA CAACGCTGCC GCCGTCGGCG ACGCCGCGCG ACGAATTCGA TCTGGGTATC
GGCTACATGC AGCGGAAGGA CTATGCGCTC GCCGAGGAAA CCATGCGCAA TTTTACCCAG
AAATACCCGT CCGATGCGCT GACGGGCGAT GCGCAGTACT GGCTCGGCGA AAGCCTGTTT
CAGCGCCAGA AATATCGTGA GGCGGCTGAA GCTTTTCTCG GCGTCACCAC GAAATTCGAC
AGCTCGGCGA AGGCGTCCGA TGCCTTGCTG CGGCTCGGAC AATCGCTGGC CGCGCTGAAA
GAAAAGGAGG CCGCCTGCGC CGCGCTCGGC GAGGTCACGC GCAAATATCC CCGCGCTTCG
GCGGGCGTGA AGCAGGCCGT GGACCGCGAG CAGAAGCGGA TAAAGTGCTG A
 
Protein sequence
MRFRCDVHFN RQAKMSSIAP MLARAAAVAA TLLLSSHAFA QSDFGDPEIR IQQLEEQLRT 
LTGQNEELQH RNRMLEQQLQ QLQQLQPGAA PPGVAAAAPV QPSPGYRQPA YDQRGGEGPV
AQEQAVTVPA QGHRGDAFDP SQNPNAPGVP RALGGGQMPM PAEAAGSPGG REAGAPLDLA
NTSPRRPGGY PTPDSAPPNT GGLTTLPPSA TPRDEFDLGI GYMQRKDYAL AEETMRNFTQ
KYPSDALTGD AQYWLGESLF QRQKYREAAE AFLGVTTKFD SSAKASDALL RLGQSLAALK
EKEAACAALG EVTRKYPRAS AGVKQAVDRE QKRIKC