Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nham_3508 |
Symbol | |
ID | 4029439 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrobacter hamburgensis X14 |
Kingdom | Bacteria |
Replicon accession | NC_007964 |
Strand | - |
Start bp | 3860565 |
End bp | 3861575 |
Gene Length | 1011 bp |
Protein Length | 336 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637971920 |
Product | TPR repeat-containing protein |
Protein accession | YP_578697 |
Protein GI | 92118968 |
COG category | [S] Function unknown |
COG ID | [COG1729] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR02795] tol-pal system protein YbgF |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.024508 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCGCTTTC GATGTGACGT TCATTTCAAT CGTCAGGCCA AAATGTCATC CATAGCCCCG ATGCTTGCGC GCGCAGCGGC CGTTGCCGCG ACGCTTTTGC TGTCGTCACA CGCCTTCGCG CAATCCGACT TCGGCGACCC TGAAATCCGC ATTCAGCAAC TGGAAGAGCA ACTGCGAACG CTGACCGGAC AGAACGAGGA ACTGCAGCAC CGGAATCGAA TGCTCGAACA ACAGTTGCAG CAGTTGCAGC AGTTGCAGCC GGGAGCCGCG CCGCCCGGCG TCGCGGCGGC TGCGCCGGTG CAACCAAGCC CGGGTTACCG CCAGCCGGCC TACGATCAGC GCGGAGGGGA GGGGCCCGTC GCGCAGGAAC AGGCCGTGAC CGTGCCTGCG CAAGGCCATC GCGGCGATGC TTTCGATCCC AGCCAGAATC CCAACGCGCC GGGTGTCCCG CGCGCGCTGG GCGGCGGACA GATGCCGATG CCGGCGGAAG CCGCGGGCTC GCCCGGAGGT CGGGAAGCCG GCGCACCGCT CGACCTTGCC AATACCAGTC CACGGCGTCC GGGGGGGTAT CCGACGCCCG ACTCCGCTCC GCCCAATACC GGCGGTTTGA CAACGCTGCC GCCGTCGGCG ACGCCGCGCG ACGAATTCGA TCTGGGTATC GGCTACATGC AGCGGAAGGA CTATGCGCTC GCCGAGGAAA CCATGCGCAA TTTTACCCAG AAATACCCGT CCGATGCGCT GACGGGCGAT GCGCAGTACT GGCTCGGCGA AAGCCTGTTT CAGCGCCAGA AATATCGTGA GGCGGCTGAA GCTTTTCTCG GCGTCACCAC GAAATTCGAC AGCTCGGCGA AGGCGTCCGA TGCCTTGCTG CGGCTCGGAC AATCGCTGGC CGCGCTGAAA GAAAAGGAGG CCGCCTGCGC CGCGCTCGGC GAGGTCACGC GCAAATATCC CCGCGCTTCG GCGGGCGTGA AGCAGGCCGT GGACCGCGAG CAGAAGCGGA TAAAGTGCTG A
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Protein sequence | MRFRCDVHFN RQAKMSSIAP MLARAAAVAA TLLLSSHAFA QSDFGDPEIR IQQLEEQLRT LTGQNEELQH RNRMLEQQLQ QLQQLQPGAA PPGVAAAAPV QPSPGYRQPA YDQRGGEGPV AQEQAVTVPA QGHRGDAFDP SQNPNAPGVP RALGGGQMPM PAEAAGSPGG REAGAPLDLA NTSPRRPGGY PTPDSAPPNT GGLTTLPPSA TPRDEFDLGI GYMQRKDYAL AEETMRNFTQ KYPSDALTGD AQYWLGESLF QRQKYREAAE AFLGVTTKFD SSAKASDALL RLGQSLAALK EKEAACAALG EVTRKYPRAS AGVKQAVDRE QKRIKC
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