| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3439 |
|---|
| Symbol | |
|---|
| ID | 4031873 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 3784284 |
|---|
| End bp | 3786083 |
|---|
| Gene Length | 1800 bp |
|---|
| Protein Length | 599 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637971850 |
|---|
| Product | ATP-dependent DNA helicase RecQ |
|---|
| Protein accession | YP_578629 |
|---|
| Protein GI | 92118900 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0514] Superfamily II DNA helicase |
|---|
| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01389] ATP-dependent DNA helicase RecQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.833511 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCCA CCGCCCTCGA AATCCTCAAG ACCGTCTACG GCTATGATGC GTTCAGGGGG
CCGCAGGCGC GCATCGTCGC GCATGTCATT GGCGGCGACA ACGCCTTTGT GTTGATGCCG
ACGGGCGGCG GAAAGTCGCT CTGCTACCAA ATCCCCGCCA TCGCTAGACC CGGCATGGGA
CTTGTGGTGT CGCCGCTACT GGCGCTGATG GCCGATCAGG TGGCGGCCTT GCGGCAGGCG
GGCGTGAGGG CGGCCGCCCT CAACTCGGAT CTGCCGGCCG ACGAGCGGCG CGCGCTGTGG
CGCGACATCC ACGGCGGCAG TCTCGATCTG CTCTACGTCG CGCCCGAGAC GCTACTGCGC
CAGGCGGTGC TGGAGCGGCT CGGCCAGACG CGGCTGTCGC TGATCGCCAT CGACGAGGCC
CATTGCCTGT CGCAGTGGGG ACACGACTTC CGCCCTTCCT ACCGCCAGCT CGACGCCCTT
GTCGGGCTGT TTCCCGACAC GCCGCGCATG GCGCTGACGG CGACGGCCGA CGAGCCGACG
CGCGCCGAAA TCCTGTCGCA TCTCGACATC GCCGAAACTG ACGCCTTCAT CGCCGGTTTC
GACCGGCCCA ACATCCGTTA CACGATCGAG GAAAAGGACA ATCCGCGCGC GCAACTGAAG
GACTTCCTCA AGCGCCACAA GGGCGAGAGC GGCATCGTCT ACTGCCTGTC CAAGCGGAAA
ACGGAGGAAA CCGCCGCCTG GTTGCGCGAC CAAGGCTATG ACGCGCTCGC CTATCACGCG
GGGATGGACA GGGCCGCGCG GGAGGCCAAC CAGATGCGTT TCCAGCACGG CGAGGCGGTC
GTCATGGTCG CGACCATCGC CTTCGGCATG GGCATCGACA AGCCGGACGT GCGCTTCGTC
GCCCATATCG ACCTGCCGGG CAGCATCGAG GCCTATTATC AGGAGACGGG CCGCGCCGGG
CGCGACGGCC TGCCGTCCGA TGCGCTGATG CTTTACGGTT ACGAGGACAT CGCGCTGCGC
AGCCGCTTCA TCGAGCAATC GGATACGCCC GACCCGCGCA AGCGCATGGA GCGCCAGAAG
CTCGACGCGT TGCTGGGGTT GGCCGAGACG GCGGGCTGCC GCCGGCAGGT GCTGTTATCC
TATTTCGGTG ACGATTGCGA GCCATGCGGC AATTGCGACA CCTGCGCCGA GCCGCCAAGG
TTGTTCGATG GCACGATAGC CGCGCAGAAG GCGCTGTCGT GCGTCTACCG CACCGGCGAG
CGCTTCGGGC AGGCCTATAT CGTTGACGTG CTGCTCGGCG TCGAGAACGA CCGCATCGCC
CAGTTCGGCC ACAATCGTGT TTCCACCTTC GGCATCGGCA CCGAGCACGA CAACCGCACT
TGGCGGGCGA TCCTGCGCCA GTTGATCGCG CTGCGCCTTG TCGACGTCGA TCTGGCCGGC
CATGGCGGCC TGTCGATCAC GCCGGCCGGC CGCGACTTTC TGCGCGACAA GCCGACGCTG
ATGCTGCGGG TGCCGGCGGC TCCGCGCGCG CGGCGCCAAA AGGTCGCGCG CAGCGCGGCG
CAGTCTGCCG TCACTGAGGC GGACCGTGAC CTGTTCCAGG CGTTACGGCA AAAGCGCATG
GACATAGCGC GCGCGCAAAA CGTGCCGCCC TATGTGATTT TCCACGACAA GACGCTGATC
GAACTGGCGG CGGCGCGGCC CGCGTCGCGC GCCGAGATGG CGAAGGTGCC CGGTGTCGGT
GACGCCAAGC TCGACCGCTA TGGCCCGGCC TTCCTGGCGG TGATCGCCGA GCACGCATGA
|
|---|
| Protein sequence | MIATALEILK TVYGYDAFRG PQARIVAHVI GGDNAFVLMP TGGGKSLCYQ IPAIARPGMG
LVVSPLLALM ADQVAALRQA GVRAAALNSD LPADERRALW RDIHGGSLDL LYVAPETLLR
QAVLERLGQT RLSLIAIDEA HCLSQWGHDF RPSYRQLDAL VGLFPDTPRM ALTATADEPT
RAEILSHLDI AETDAFIAGF DRPNIRYTIE EKDNPRAQLK DFLKRHKGES GIVYCLSKRK
TEETAAWLRD QGYDALAYHA GMDRAAREAN QMRFQHGEAV VMVATIAFGM GIDKPDVRFV
AHIDLPGSIE AYYQETGRAG RDGLPSDALM LYGYEDIALR SRFIEQSDTP DPRKRMERQK
LDALLGLAET AGCRRQVLLS YFGDDCEPCG NCDTCAEPPR LFDGTIAAQK ALSCVYRTGE
RFGQAYIVDV LLGVENDRIA QFGHNRVSTF GIGTEHDNRT WRAILRQLIA LRLVDVDLAG
HGGLSITPAG RDFLRDKPTL MLRVPAAPRA RRQKVARSAA QSAVTEADRD LFQALRQKRM
DIARAQNVPP YVIFHDKTLI ELAAARPASR AEMAKVPGVG DAKLDRYGPA FLAVIAEHA
|
|---|
| |