| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3423 |
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| Symbol | |
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| ID | 4031857 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 3769778 |
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| End bp | 3771211 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637971834 |
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| Product | homospermidine synthase |
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| Protein accession | YP_578613 |
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| Protein GI | 92118884 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG5310] Homospermidine synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.532331 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGTCCA ATGCTTCGCC CGTGCATGCA CGCATCACCG GCCCGATCGT CATGATCGGA
TTCGGTTCGA TCGGCAAAGG CACCCTGCCG CTGATCGAGA AGCATTTCGA GTTCGACAAA
TCGCGCTTCG TCATCATCGA TCCGCATGCG GACGACACGC TGGCAAAAAA GCACGGCGTC
AGATTCATCA GGCAGGCCAT CACCCGCGAC AACTATCAGG ACGTCCTGGT TCCGCTGCTG
ACGCAAGGCG ACGGCCAGGG TTTCTGTGTC AACCTGTCGG TCGACACCGG CTCCGTCGAT
CTCATGACCA TGTGCCGCGA GATCGGATCG CTTTATATCG ACACCGTGAT CGAGCCGTGG
CTCGGATTCT ATTTCGACAA GAGCGCCGGC CCCGAAAAAC GCTCCAATTA CGCGCTGCGC
GAAACGTTGC TCGCCGCCAA GCGCAAGAGC GAAGGCGGCA CCACCGCAGT TTCCACCTGC
GGCGCCAACC CCGGCATCGT GTCGTGGTTC GTCAAGCAGG CGATGCTCGA CATCGCGCGC
GATACCAACA CGCCGTTCAA CGAACCGAAG AGCCGCGAAG GCTGGGGCCA GCTCGCACAC
AAGCTCGGTG TCAAAGGGAT CCACATCGCC GAGCGCGATA CCCAGCGCGC AAAGACGCCG
AAGCCGATGA ACGTGTTCGT CAACACCTGG TCGGTCGAAG GATTCGTCTC GGAAGGTCTT
CAGCCAGCCG AACTCGGCTG GGGCACCCAC GAAAAGTGGA TGCCGGAGAA TGCCCGCAAG
CACGACACCG GATGTCAGGC CGCCATCTAT CTGCTGCAGG CCGGCGCCAA TACCCGCGTG
CGCTCATGGT GCCCGACGCC GGGCCCGCAA TACGGATTCC TCGTCACCCA TAACGAAGCG
ATCTCGATTG CCGACTACTT TACCGTTCGC GACGGCCATA ACGTGATTTA TCGTCCGACC
TGCCACTACG CCTACCACCC CGCCAACGAC GCGGTGCTGT CGCTCGACGA GATGTTCGGC
GCGGAAGGCA AGGCGCAGCC GAAGTGGCAC ATTCTGGATG AGACCGAAAT CGTTGACGGT
ATCGACGAAC TCGGCGTGCT GATCTACGGT CACAGCAAGA ACGCCTATTG GTTCGGCTCG
CAGCTCTCGA TCGAGGAAAC CCGCCGCATT GCGCCGTATC AAAATGCCAC CGGCATGCAG
GTATCGTCGG CGGTGCTGGC CGGCATGGTG TGGGCGCTGG AAAATCCGGA AGCCGGTATC
GTCGAGGCCG ACGAAATGGA CTTCCGCCGC TGCCTCGAAA TCCAGCGGCC CTATCTCGGC
CCGATGAAGG GCTACTACAC CGACTGGACG CCGCTCGCCG ATCGCCCCGG GCTTTTTCCT
GACGACATCG ATACGTCGGA TCCGTGGCAG TTCAGGAACG TGCTGGTACG GTGA
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| Protein sequence | MPSNASPVHA RITGPIVMIG FGSIGKGTLP LIEKHFEFDK SRFVIIDPHA DDTLAKKHGV
RFIRQAITRD NYQDVLVPLL TQGDGQGFCV NLSVDTGSVD LMTMCREIGS LYIDTVIEPW
LGFYFDKSAG PEKRSNYALR ETLLAAKRKS EGGTTAVSTC GANPGIVSWF VKQAMLDIAR
DTNTPFNEPK SREGWGQLAH KLGVKGIHIA ERDTQRAKTP KPMNVFVNTW SVEGFVSEGL
QPAELGWGTH EKWMPENARK HDTGCQAAIY LLQAGANTRV RSWCPTPGPQ YGFLVTHNEA
ISIADYFTVR DGHNVIYRPT CHYAYHPAND AVLSLDEMFG AEGKAQPKWH ILDETEIVDG
IDELGVLIYG HSKNAYWFGS QLSIEETRRI APYQNATGMQ VSSAVLAGMV WALENPEAGI
VEADEMDFRR CLEIQRPYLG PMKGYYTDWT PLADRPGLFP DDIDTSDPWQ FRNVLVR
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