| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3407 |
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| Symbol | |
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| ID | 4033230 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 3750696 |
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| End bp | 3753194 |
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| Gene Length | 2499 bp |
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| Protein Length | 832 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637971818 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_578597 |
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| Protein GI | 92118868 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3264] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.121329 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGACAA TCCGCGCGGC AATTTTCTTC ATCGCCTTTT TATCATGGAT GCCGTTGCAC
GCCGCGACGC CTGCACCCGG TAATGCCGGG AGTGCCAAAC CGGCAAGCCC GGCTGCCGCA
CCTGCGGCGG CCGCGCCGGC TGAAGATCTG CCGTCGGTTC CGGCGCCGCA GTTTCCTCAA
GCACAGTCGA AACTCGACGG CTGGAAGCAG ACGCTCGATC AGGTCGAGTC GGCGCTGCGC
GCCCGCGCCA TCGACGATGT CATTTTGAAC GATCTCCGGG ATCGGGCCGC AGCGGCGCAG
AGCCAAGCGC GCGAGCTGAT ATCGGGAATG ACGCCTCCGC TCGAAGCGGC GACCGCGCGG
GCTGCCGAAC TCGCGCCAAG TCCCGAAGCG ACCGCTCCGC CGCCGGACGA CGTGAAGCTC
GAGCGCGCCA AACTGGTGGC TGAAGTTGCC GCCCGCCAGG GCATCGTTCA GCAGGCCAAG
CTCATCAACG TGCGGGCCCA GCAAACAATC GACGCGATCT CCGATCGGCG GCGCGCGATC
TTCAACGATT CCGTGCTGCA ACGCTCTCCA AGCCTGGTCA GTCCCGCTTT CTGGATCACG
GCCGCATCCG CCGTGCCGAT TGCCGCCGGC CACCTGGTCG AGCTCCTCTC CAAGTGGGGG
CGGGTGCTGG CATCACAACC GCTTCGCGCC GCCTCCGGCT TCGTTATCGC AGCCATCGTG
GTGCTCGGCT TCTTCCTGTC ACCGGGCCGG CGCTGGTGGT CGCGCTGGAC AAAACGCGAC
CCCGAGATTG CCAATCCCAG CCCGCTGCGG AAGACCGGCT CCGCCGCCGT CATCGTCCTT
GCGGACACCG CGCTCACGGC CGTCGCGCTG CTCGTGCTCT ACCAGGCGCT CATAATGCTC
GGGGTTCTAC CCGACGACGT GAGCCCCATC ATTCGGGCCT TGTTCCTGGG CATCACCTTC
GGCTTCTTCT TTGTCCGCCT GACCATTGCG GTCCTCGCGC CCAGTCGGCC GACGTGGCGT
TTGATCGAAC TGGACAATGC TGCGGCCGAC GGCATGATCT CCTTCTCGGT CCTGCTCGCC
ATAATCATCG CGGTCGGCGT GGTTGTGGAC GCCACAAACC TCGCGATCGG GGCGCCCGTC
GAACTTTCGA TTGCAAGTCA GGGCATCGTT GCGGTCGTGA AGGCGCTGCT TTATATGGGC
GCGCTGCGCG TTGCGGCCGC CACTGAAGCC GACGACGAAA CCCCCGCTGC TTCCTCCGCG
AAAAAGTCCG CGTGGCGCCT GCTGATTCCG GTTGGCTGGG TGATGGCTAC GGCCGCCGTT
CTCGCGCCGC TCGGGGGATA CGTCGCGTTT GCCCGGTTTG TTACGATTGA AATGGGCGTG
GTGATCACCG CGCTTATGAG CTTCGTGCTG CTGAGCCGGT TCGCCGCGGT TCTCATCAAT
ACGACATTTG CCTTTCATGG CGCGATCGGC CGCTTTCTGC GGCAAACCGC GGGCCTCGGG
AGCGGCGCGG TCCGGCAGAT CGCCGCGGTG CTCGGCGGCC TCATCCAACT GTCCCTGATA
GGGCTGACGG CCTTCGTCGT GCTCACGACC TGGGGGATCC GTTCCGACGA CGTCGTCACG
TCGATGTCTT CGGCATTCTT CAGCTTTCAG ATCGGCAATA TCACCATTTC GCCGTCCGCG
ATTCTCGGCG CGGTTGCGGT TCTCATCATC GGGGTCATGG CCACGCGCGC GCTCAAGCGC
TGGCTCGAGG AGCGTTTCCT GCCGGAAACC AATCTCGATG TCGGCGTTCG CAGTTCGATC
GGCACCGGCG CGGGTTATGC GGGCGTCATT CTCGCCACCC TGATCGCGCT GTCGTATGTC
GGTCTCAACC TGCAAAACGT CGCCATCGTC GCCGGTGCGC TGTCGGTCGG CATCGGCTTC
GGACTGCAAT CCATCATCAA CAACTTCGTT TCCGGTCTGA TTCTCCTCGT GGAGCGCCCG
ATCAAGGTCG GGGATCGCAT CGAGGTCGGC AGCCGCATGG GCGTCGTCAA ACGCATCAAC
GTGCGCGCCA CCGAGATCGC GACCTACGAC AACCTCTCGG TGATCGTGCC AAACGCGGAA
CTGATCAGCG GACAGGTCGT CAACTGGATG CATGGCAGCT ATTCGGCCCG TCTGTCGGTG
ACGGTCGGCA CCTCCGGTGA TGCAGACCCG GACAAGGTCA TCGAAATCCT GCTCGATATC
GTCGCGCACC ATCCACGCGC GCTGAAGTCA CCCGAGCCGT TTGCCATTCT CGGCAATTTC
GCCGCCGACG GGCTGGAGTT CATGGTGTTC TTTCACGTCG CGCATATCGG CATCGACGCC
GGAGCCGCCA ATGAGGTCAG GCTCGAGATC CTCAAACGCT TCCGCAAGGA GGGAATCGAC
CTTCCAAACC CTCAACGGGA CCTGCATGTA CGGGATCTCG ATCGCATCGA AGCTCTGGTG
CGCGAACTGG TCCGCCCCGA ACGCTCCAGC CCATCATAG
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| Protein sequence | MKTIRAAIFF IAFLSWMPLH AATPAPGNAG SAKPASPAAA PAAAAPAEDL PSVPAPQFPQ
AQSKLDGWKQ TLDQVESALR ARAIDDVILN DLRDRAAAAQ SQARELISGM TPPLEAATAR
AAELAPSPEA TAPPPDDVKL ERAKLVAEVA ARQGIVQQAK LINVRAQQTI DAISDRRRAI
FNDSVLQRSP SLVSPAFWIT AASAVPIAAG HLVELLSKWG RVLASQPLRA ASGFVIAAIV
VLGFFLSPGR RWWSRWTKRD PEIANPSPLR KTGSAAVIVL ADTALTAVAL LVLYQALIML
GVLPDDVSPI IRALFLGITF GFFFVRLTIA VLAPSRPTWR LIELDNAAAD GMISFSVLLA
IIIAVGVVVD ATNLAIGAPV ELSIASQGIV AVVKALLYMG ALRVAAATEA DDETPAASSA
KKSAWRLLIP VGWVMATAAV LAPLGGYVAF ARFVTIEMGV VITALMSFVL LSRFAAVLIN
TTFAFHGAIG RFLRQTAGLG SGAVRQIAAV LGGLIQLSLI GLTAFVVLTT WGIRSDDVVT
SMSSAFFSFQ IGNITISPSA ILGAVAVLII GVMATRALKR WLEERFLPET NLDVGVRSSI
GTGAGYAGVI LATLIALSYV GLNLQNVAIV AGALSVGIGF GLQSIINNFV SGLILLVERP
IKVGDRIEVG SRMGVVKRIN VRATEIATYD NLSVIVPNAE LISGQVVNWM HGSYSARLSV
TVGTSGDADP DKVIEILLDI VAHHPRALKS PEPFAILGNF AADGLEFMVF FHVAHIGIDA
GAANEVRLEI LKRFRKEGID LPNPQRDLHV RDLDRIEALV RELVRPERSS PS
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