| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3376 |
|---|
| Symbol | |
|---|
| ID | 4029666 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 3714448 |
|---|
| End bp | 3717183 |
|---|
| Gene Length | 2736 bp |
|---|
| Protein Length | 911 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637971786 |
|---|
| Product | CheA signal transduction histidine kinase |
|---|
| Protein accession | YP_578566 |
|---|
| Protein GI | 92118837 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0643] Chemotaxis protein histidine kinase and related kinases
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.163998 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGATC TCCTCCGCGA ATTCCTGACC GAGACCAATG AGAGTCTGGA CACCGTTGAC
AATCAGCTCG TCAGTTTCGA GCAGGATCCG AACAACGCGA AGATATTGGA TAATATCTTT
CGGCTGGTCC ACACCATCAA AGGCACGTGC GGTTTTCTGG GCCTTCCAAG GCTAGAGGCG
CTCGCCCATG CGGCGGAAAC GCTGATGGGC AAGTTTCGCG ACGGCATGCC GGTGACCGGC
GAGGCCGTGA CGCTCATTCT CTCCACCATC GACCGCATCA GGGACATCCT GAGTCAACTC
GAGGCGACCG AGACCGAGCC GGAGGGGGCC GATACCGATC TGATCGACAA GCTGCATCAC
ATGGCCGAGC ACGGCGCGAC CGCGCCCGTT GCTCCCGAGC CCGCGTCTCC TTCCGAGCCC
GAGCCCGCGC TGGAGATCGC CGCTGCCGAG CCGGCGCAGG AAACCGGGAC GGTGACCTTT
CAGGTGCTGG AACGGCCGCT GCGCCCGGGT GAAGTCTCCC TCGACGAGCT TGAGCGCGCG
TTCCGCGAGA CGGAGGCCGA GCCGGTCGCG CCCGCTCCGC AGCCGGCGTC CGACGCGCCC
GCGCCGGCCG TTGCTCCGAA GGCCGTCGCC AAGGTTATCG CCAAGGCCGC GCCGAAGAAG
ACCGCTGCCG AGATGGAGAC CCCGGAGGGC GACCGGGTCG CCCACCAGTC GATCCGCGTC
AACGTCGATA CGCTCGAGCA CCTGATGACG ATGGTGTCCG AACTGGTGCT GACGCGCAAC
CAGCTGCTCG AGATCAGCCG CCGGCACGAA GACAACGAAT TCAAGGTGCC GTTGCAACGG
CTGTCCAACG TCACCGCGGA GCTGCAGGAA GGCGTCATGA AGACGCGGAT GCAGCCGATC
GGCAATGCCT GGCAGAAGTT GCCGCGGATC GTGCGCGACC TGTCGAGCGA ACTCGGCAAG
CAGATCGAAC TCGAGATGCA TGGCGCGGAC ACGGAACTCG ACCGTCAGGT TCTCGACCTG
ATCAAGGATC CGCTGACGCA CATGGTGCGC AATTCCGCCG ACCACGGCCT GGAAACGCCG
GCGGAGCGCA TCAAGGCCGG CAAGCCGGAA CAGGGCACCA TCCGCCTTTT GGCCTATCAC
GAGGGCGGCC ACATCATTAT CTGCATCGCC GATAATGGTC GCGGCCTCAA CACCGAGCGC
ATCAAGGCCA AGGCAATCCA GAACGGCCTC GCGACCGAGA CCGAACTCGA GAAGATGACC
GAGGCGCAGA TCCACAAGTT CATCTTCGCT CCGGGATTCT CGACCGCGGC GGCAGTGACC
AGCGTCTCCG GACGCGGCGT CGGCATGGAC GTGGTGCGCG CCAACATCGA CCAGATCGGC
GGCACCATCG ACGTCAAGTC GGTGGCCGGC GAGGGCTCGA GCGTCACCAT CAAGATTCCG
CTGACGCTGG CGATCGTGTC GGCGCTGATC GTGGAGGCCG CAGGCGAGCG TTTCGCTATA
CCGCAGCTCT CGGTGGTCGA GCTGGTGCGC GCGCGCGCCA ATTCGGAGCA CCGCATCGAA
CGCATCAAGG ACACCCCGGT GCTGCGGCTG CGCAACAAGC TTTTGCCGCT GATGCACTTG
AAGAAGATTC TGAAGATCGA TGACGGCACC TCCAGCGATC CGGAGAACGG TTTCATCGTG
GTGACGCAGG TCGGCAACCA GACCTTCGGC ATCGTCGTGG ACGGCGTGTT CCATACCGAG
GAAATCGTGG TCAAGCCGAT GTCGACCATA CTGCGGCATA TCGGCATGTT CTCGGGCAAC
ACCATTCTCG GCGACGGCGC CGTGATCATG ATCATCGACC CGAACGGCAT CGCGCACGCG
CTGGGCGCAT CGGTCGCAAC TCAGCAGGAA CTTGCCGACC AGAACGCGGC GGGCGTCAGC
GACGCCGAGC AGATGACGTC GCTGCTGGTG TTCCGCGCCG GATCGGATCA GCCCAAGGCC
GTGCCGCTCG CGCTCGTCAC GCGACTCGAG GAGTTCAGGG TCGACAAGAT CGAGATCTCC
GACGGCCGCT ATATGGTGCA GTACCGCGAT CAGCTCATGC CACTGGTGCA GATGGATGGC
GTTTCGGTCG GGACCGATGG CACGCAGCCG GTCCTGGTGT TCGCTGACGA CGGCCGTGCG
GTGGGACTGG TGGTCGATGA GATCATCGAC ATCGTCGAGG AACGGCTGAA CATCGAGGTG
GCGAGCAGTC AGCAGGGCAT TCTCGGCTCC GCTGTCATCA AGGGCCGGGC GACGGACGTG
ATCGACATCG GTCATTTCCT GCCGTTGGCC TTCGCCGACT GGTTCAAGCG CAAGGAGATG
AGTGCGGCGG CCGCGACGCG GTCGGTGCTG CTGGTGGATG ACAGTGCCTT CTTCCGCAAC
ATGCTGGCGC CGGTTCTCAA GGCCGCAGGT TATCAGGTCC GGCTCGCGAC CAACGCACAG
GAAGGTCTGG TCGCGCTGCG ATCGGGCCAG GAGTTCGACG CAATCCTCAC CGATATCGAA
ATGCCGGACA TGAACGGCTT CGAGTTCGCG GAGACGGTGC GCTCCGATCG CCGCCTGAGC
GACACGCCGA TCATCGCGCT GTCGTCGATG ATCTCTCCGG CCGCGATCGA GCGCGGCCGT
CAGGCCGGCT TCCACGACTA CGTCGCCAAG TTCGACCGGC CCGGCCTGAT TGCCGCGCTG
AAGGAACAGA CCGCCGAAAT GATCCGGGCG GCATGA
|
|---|
| Protein sequence | MDDLLREFLT ETNESLDTVD NQLVSFEQDP NNAKILDNIF RLVHTIKGTC GFLGLPRLEA
LAHAAETLMG KFRDGMPVTG EAVTLILSTI DRIRDILSQL EATETEPEGA DTDLIDKLHH
MAEHGATAPV APEPASPSEP EPALEIAAAE PAQETGTVTF QVLERPLRPG EVSLDELERA
FRETEAEPVA PAPQPASDAP APAVAPKAVA KVIAKAAPKK TAAEMETPEG DRVAHQSIRV
NVDTLEHLMT MVSELVLTRN QLLEISRRHE DNEFKVPLQR LSNVTAELQE GVMKTRMQPI
GNAWQKLPRI VRDLSSELGK QIELEMHGAD TELDRQVLDL IKDPLTHMVR NSADHGLETP
AERIKAGKPE QGTIRLLAYH EGGHIIICIA DNGRGLNTER IKAKAIQNGL ATETELEKMT
EAQIHKFIFA PGFSTAAAVT SVSGRGVGMD VVRANIDQIG GTIDVKSVAG EGSSVTIKIP
LTLAIVSALI VEAAGERFAI PQLSVVELVR ARANSEHRIE RIKDTPVLRL RNKLLPLMHL
KKILKIDDGT SSDPENGFIV VTQVGNQTFG IVVDGVFHTE EIVVKPMSTI LRHIGMFSGN
TILGDGAVIM IIDPNGIAHA LGASVATQQE LADQNAAGVS DAEQMTSLLV FRAGSDQPKA
VPLALVTRLE EFRVDKIEIS DGRYMVQYRD QLMPLVQMDG VSVGTDGTQP VLVFADDGRA
VGLVVDEIID IVEERLNIEV ASSQQGILGS AVIKGRATDV IDIGHFLPLA FADWFKRKEM
SAAAATRSVL LVDDSAFFRN MLAPVLKAAG YQVRLATNAQ EGLVALRSGQ EFDAILTDIE
MPDMNGFEFA ETVRSDRRLS DTPIIALSSM ISPAAIERGR QAGFHDYVAK FDRPGLIAAL
KEQTAEMIRA A
|
|---|
| |