Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nham_3278 |
Symbol | |
ID | 4029472 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrobacter hamburgensis X14 |
Kingdom | Bacteria |
Replicon accession | NC_007964 |
Strand | - |
Start bp | 3612405 |
End bp | 3614024 |
Gene Length | 1620 bp |
Protein Length | 539 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637971690 |
Product | EmrB/QacA family drug resistance transporter |
Protein accession | YP_578472 |
Protein GI | 92118743 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.629429 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTGCGA TCCCGATCAT TTCCTTGCCC GCCGCACTCC GCAGCACGCC TGCGGCACGC TCCTCTCAGG CGCCGTCGGC GCCGTCGTTC AGAACCTGGA TCGCAGTGTT CGGCGCGACG CTCGGCGCCT TCATGGCGGT GCTGAACATT CAGATCGTCA ACGCGTCGCT GGCCGACATT CAGGGCGCGA TCGGCGCCGG CATCGACGAC GGCGGCTGGA TTTCGACCTC TTATCTGATC GCGGAGATCG TCGTCATTCC ACTGAGCGGC TGGCTGGCGC AGGTCTTTTC CGTTCGCGTC TACCTGCTGA CCAATGCCGT CCTGTTCCTG GTGCTGTCCG TGGCGTGCGC CTTCGCGCAA ACCCTGCCGC AGATGATCGT GCTGCGCGCG ATCCAGGGGT TCACCGGCGG CGTGCTGATC CCGATGGCCT TCACATTGAT CATCACGCTG CTGCCGAAGG TGAAGCAGCC GATCGGGCTG GCGCTGTTCG CGCTGTCGGC GACCTTTGCG CCGGCGATCG GCCCGACGAT CGGCGGCTAT CTCACCGAGA ACTGGGGCTG GCAGTTCATT TTCTACGTCA ACCTCGTTCC CGGTCTGTTG ATGCTGGGCA TGCTCTGGTT CTCGCTGGAT CGCAAGCCGA TGCAACTGTC GTTGCTGCGT CAGGGTGATT GGGCCGGCAT CGTGACCATG GCTGTCGGCC TTGGCGCGCT GCAAACGGTG CTCGAAGAAG GCAACAAGGA CGACTGGTTC GGTTCGCCTT TCATCCTCCG GCTGTCGGTG ATCGCCGCGA TCTCGTTGTC GCTGTTCCTG TGGATCGAAC TGACGGGCGA CAAACCGCTC TTGAACCTTC GCCTGCTGTT CCGTCGCAAC TTCGGCTTCG GCATTCTCGC CAATTTCCTT CTGGGCGTTG CGCTCTACGG ATCGGTCTTC ATCCTGCCGG TTTATCTGTC CCGCATTCAG GGCTACAATG CCGAGCAGAT CGGAATGGTG CTGGCCTGGA CCGGCCTGCC GCAATTGCTG CTGATTCCGC TGGTGCCGCG ATTGATGAAG CGCTTCGATC CCCGTCTCCT GATCGGGGTC GGCTTCGCAC TGTTTGCAGC GAGCAACTTC ATGAACATCG ACATGACGGC GGACTATGCC TCCGATCAAC TGCTGTGGCC CAACGTGGTT CGCGCGGTCG GGCAGGCGTT GATCCTGACG CCGCTGTCGG TGGTCGCCAC CGCAGGCATC GAGACGGAAA ACGCCGGCTC GGCTTCCGGT CTGTTCAATA TGATGCGCAA TCTGGGCGGC GCCGTCGGCA TCGCGATCCT GCAAACGTTC TTGACCAAGC GCGAGCAGTT TCACTCCAAC GTGTTGATGC AGTCGGTCTC GACTTTGGAA CAGGCGACGC GGACCCGGAT TGAGCTGTTG ACCAACTACT TCATGAACCA CGGTGTCGCC GATCCAGCGG CCGCTTCACA TCAGGCCGTG GTCGCCATCG GTCGCGTCGT GCAGAAGCAG GCTTATGTAA TGGCATTCAG CGATACCTTT TTTCTGCTCG GAGCGGCGCT GATCGTCGCG CTTGCCGCAT CGCTTTTGCT GAGGAAGCCC GCCCATCCCG ATGCGGGCGG CGCGCACTAG
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Protein sequence | MAAIPIISLP AALRSTPAAR SSQAPSAPSF RTWIAVFGAT LGAFMAVLNI QIVNASLADI QGAIGAGIDD GGWISTSYLI AEIVVIPLSG WLAQVFSVRV YLLTNAVLFL VLSVACAFAQ TLPQMIVLRA IQGFTGGVLI PMAFTLIITL LPKVKQPIGL ALFALSATFA PAIGPTIGGY LTENWGWQFI FYVNLVPGLL MLGMLWFSLD RKPMQLSLLR QGDWAGIVTM AVGLGALQTV LEEGNKDDWF GSPFILRLSV IAAISLSLFL WIELTGDKPL LNLRLLFRRN FGFGILANFL LGVALYGSVF ILPVYLSRIQ GYNAEQIGMV LAWTGLPQLL LIPLVPRLMK RFDPRLLIGV GFALFAASNF MNIDMTADYA SDQLLWPNVV RAVGQALILT PLSVVATAGI ETENAGSASG LFNMMRNLGG AVGIAILQTF LTKREQFHSN VLMQSVSTLE QATRTRIELL TNYFMNHGVA DPAAASHQAV VAIGRVVQKQ AYVMAFSDTF FLLGAALIVA LAASLLLRKP AHPDAGGAH
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