Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nham_3217 |
Symbol | |
ID | 4031996 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrobacter hamburgensis X14 |
Kingdom | Bacteria |
Replicon accession | NC_007964 |
Strand | - |
Start bp | 3543601 |
End bp | 3545382 |
Gene Length | 1782 bp |
Protein Length | 593 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637971630 |
Product | tetratricopeptide TPR_2 |
Protein accession | YP_578412 |
Protein GI | 92118683 |
COG category | [R] General function prediction only |
COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.7268 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTGTCCA TTCGTTTCAA TCGCCTGGCG ATGGCCGTTG CCGCCGCGAC GTCGTTGGTG CTGTCCGGCC CGCTGGCAGC ACAGACGCCG GATCATCCGA CCGACACCGC GCAGTTTCCC AGCGCTCACG ATTTGCGCAC CATGACGAGG GCGGGCAGCT ATCTCGCCGC GCGCCATGCC AGCGTGGAGC GCGACGCCAA GTCCGCGGCG GCGTTCTATC GTTCGGCGCT GCGCACCGAT CCGAAAAACA ACGAGCTTCT GGATCGCGCG TTCATCTCGT CGCTGGCCGA GGGCGAGATT GCCGACGCCG TGAAACTCGC CGACCGCATT CTGACCATCG ACAAATCCAA TCGCGTCGCG CGGCTGGTCA TCGGCGTCCA TAATCTCAAG TTGAAGAAGT ACGCCGCCGC CCGGAAGAAC ATCAATCAAT CCGTCCGCGG GCCGATCACC GATCTGGTGG CGACGTTGCT GTCGGGCTGG GCCGACTATG GCGCCGGCGA CGTCAAGCAG GCTGTCGCCA ATATCGACAA GCTGACCGGC CCGGAATGGT ATCCGATTTT CAAGGACCTG CATTCGGGGA TGTTGCTCGA TCTTGCCGGC CGGGAAAAGG ACGCCGGCGT TCGTCTCGAG CGTGCCTATA AACTCGACGA TTCCGCGCTC CGCGTTGCCG ATGCCTATGC GCGGTGGCTG TCACGCAACA AGGGCGACGC GGCGGCGCTG GCCGTGTATG AGTCGTTCGA CAAGAAACTG GCGCGGCATC CGCTGATTCT GGAAGGCATC AAGGAGACCA AGGCCGGCAA GAAACTGCCG CAGCTCGTCA GTTCGCCGCA AACCGGTGCC GCCGAAGCTC TTTACGGCAT CGGCGCGTCT CTGACCCGGC GCGGCGGCGA GGATCTGGCG CTGGTCTATC TGCAACTCGC GCTTTATCTC GCGCCCAATC AGCCGATGGC GCTGTTGTCG CTCGCCGACC TCTATGAATC GGTGAAGAAG CCGGAGATGG CGATCGGCGC CTATCAGCGC GTACCTGCCG ATTCGCCCCT GAAACGCAAT GCGCAGATTC AACTCGCGAC CAACCTTGAT GCCGTCGATC GCAGCGACGA GGCAATCAAG ATTCTCAAGG ATGTCACCGA GCAGGACCCG AAGGACCTGG AAGCGATCAT GGCGCTCGGC AACATCGAGC GCGGCCACAA GAAGTTCGCC GATTGCGCAA AAACCTACGC CAAAGGCATC GACGTGATCG CCGAGGCGAA GGACAAGCCG AACTGGGTCT ACTACTATTT CCGCGGCATC TGCGAAGAGC GGTCGAAGAA TTGGGACAAG GCGGAAGTCG ACATGAAGAA GGCGCTCGAG ATTCAGCCCG AGCAGCCGCA CGTGCTGAAC TATCTCGGCT ATTCCTGGAT CGACCGCGGT CTCAACCTCG ACGAAGCCAT GAAGATGATC AAGCGCGCCG TCGATCAGCG GCCGGACGAC GGCTATATCG TCGACAGCCT CGGCTGGGCC TATTACCGCA TCGGCAACTA CGAGGAGGCG GTCAAGACGC TCGAGCGTGC CATCAACCTC AAGCCCGAAG ATCCGACGGT GAACGATCAC CTCGGCGACG CTTACTGGCG CGTCGGCCGG ACGCTGGAGG CGAAATTCCA GTGGGCGCAC GCGCGCGACC TGAAGCCGGA GCCGGACGAA CTGCCGAAGA TCGAGGCCAA GATCGAAAAC GGCCTGCCGG CGGATGAAAC CCCGGCGGCG GCGTCGGCTG ACAAGAAGAA GCAAGACGGC AAGGGCGGCT GA
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Protein sequence | MLSIRFNRLA MAVAAATSLV LSGPLAAQTP DHPTDTAQFP SAHDLRTMTR AGSYLAARHA SVERDAKSAA AFYRSALRTD PKNNELLDRA FISSLAEGEI ADAVKLADRI LTIDKSNRVA RLVIGVHNLK LKKYAAARKN INQSVRGPIT DLVATLLSGW ADYGAGDVKQ AVANIDKLTG PEWYPIFKDL HSGMLLDLAG REKDAGVRLE RAYKLDDSAL RVADAYARWL SRNKGDAAAL AVYESFDKKL ARHPLILEGI KETKAGKKLP QLVSSPQTGA AEALYGIGAS LTRRGGEDLA LVYLQLALYL APNQPMALLS LADLYESVKK PEMAIGAYQR VPADSPLKRN AQIQLATNLD AVDRSDEAIK ILKDVTEQDP KDLEAIMALG NIERGHKKFA DCAKTYAKGI DVIAEAKDKP NWVYYYFRGI CEERSKNWDK AEVDMKKALE IQPEQPHVLN YLGYSWIDRG LNLDEAMKMI KRAVDQRPDD GYIVDSLGWA YYRIGNYEEA VKTLERAINL KPEDPTVNDH LGDAYWRVGR TLEAKFQWAH ARDLKPEPDE LPKIEAKIEN GLPADETPAA ASADKKKQDG KGG
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