| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3163 |
|---|
| Symbol | |
|---|
| ID | 4030236 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 3488333 |
|---|
| End bp | 3488827 |
|---|
| Gene Length | 495 bp |
|---|
| Protein Length | 164 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637971576 |
|---|
| Product | lipoprotein signal peptidase |
|---|
| Protein accession | YP_578358 |
|---|
| Protein GI | 92118629 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0597] Lipoprotein signal peptidase |
|---|
| TIGRFAM ID | [TIGR00077] lipoprotein signal peptidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCCCCC TGCGCTCCGG CATCGTCGCA GCGGTCGCGG CGCTGATTGC CGACCAGGCG
TCCAAGCTCT GGCTATTGTT CGTGTTCGAC ATCGGCCATC GCGGCGCCGT CAGGGTTACG
CCGTTCTTCG ACCTGGTGCT GGCCTGGAAC ACCGGCATCA GCTACGGCTG GTTCCAGACC
GACAGCCCGG TCGGCGCCAC GATCCTGCTC GCGATCAAGG CCGGCGCGGT AGTCCTGCTG
GCAATCTGGA TGGCGCGCTC GCAGACCCGC CTCGCGACAA TTGGCCTCGG CCTCATCATC
GGCGGCGCCA TCGGCAACGC CATCGACCGC TTCGCCTATG GCGCGGTGGT GGATTTCGTC
CTGTTTCACG TCCCACTCGC GGGAAAAACC TATAGCTGGT ACGTGTTCAA CCTTGCCGAT
GTGGCGATCG TTGCCGGGGT GATAGCCCTG TTGTATGATT CCTTCCTCAG GACACCCGCC
GCAAAAGCGC CCTGA
|
|---|
| Protein sequence | MTPLRSGIVA AVAALIADQA SKLWLLFVFD IGHRGAVRVT PFFDLVLAWN TGISYGWFQT
DSPVGATILL AIKAGAVVLL AIWMARSQTR LATIGLGLII GGAIGNAIDR FAYGAVVDFV
LFHVPLAGKT YSWYVFNLAD VAIVAGVIAL LYDSFLRTPA AKAP
|
|---|
| |