| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3055 |
|---|
| Symbol | |
|---|
| ID | 4032067 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 3371936 |
|---|
| End bp | 3372559 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637971479 |
|---|
| Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| Protein accession | YP_578261 |
|---|
| Protein GI | 92118532 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
|---|
| TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCCCAGC TTTTCCCTTC CGACGACAGG AGTGTGCTGT GTTCCGATGG CAAGGGAGTG
CGGAGGCGGC TGGAGGTGCA TTGTTTGGCA ATTCCTGATG TCAAGCTGAT CAGGACGCCA
CGATTTTCCG ACACCCGAGG ATATTTTTGC GAGACGTTCC AGCGCGCGGA CTTTGCTGCG
CAAGGCCTTG ATTGCGATTT TCTCCAGGAC AATCAATCGA GCTCCGATCG ACCAGGAACC
GTTCGTGGCC TGCACTTTCA ACGGCCGCCT TTCGCTCAGA CGAAGTTGGT TCGTGTGCTA
CGCGGCAGCA TTTTGGATGT GGCTGTCGAT CTCCGCCGCT CGTCGTCAAG CTTTGGGAGG
CATGTTGCAA TGGAGCTGAG CAGTGAGAGT AACGAGCAAC TCCTCGTTCC GGCAGGCTTT
GCCCATGGCT TTTGCACGCT CGAGCCCGAT ACGGTCGTCT TTTACAAGGT CGATCAGGTC
TATTCGGCTG CGCATGACAG CGGGGTCAAC TGGGCCGACT CCAGATTGGG AATTGAATGG
CCTGTTGCTT CGGCAGAGGC GAATTTGTCT GAGAAGGATC GCGGGCTGCC GATGTTGGTC
GATCTTGCCC CGGTTTTCGA ATAG
|
|---|
| Protein sequence | MSQLFPSDDR SVLCSDGKGV RRRLEVHCLA IPDVKLIRTP RFSDTRGYFC ETFQRADFAA
QGLDCDFLQD NQSSSDRPGT VRGLHFQRPP FAQTKLVRVL RGSILDVAVD LRRSSSSFGR
HVAMELSSES NEQLLVPAGF AHGFCTLEPD TVVFYKVDQV YSAAHDSGVN WADSRLGIEW
PVASAEANLS EKDRGLPMLV DLAPVFE
|
|---|
| |