| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_2949 |
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| Symbol | |
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| ID | 4031082 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 3239128 |
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| End bp | 3240471 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637971393 |
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| Product | Type I secretion membrane fusion protein, HlyD |
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| Protein accession | YP_578175 |
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| Protein GI | 92118446 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACGA CAATGACAGG CGATCAACCC TGGCACGTCG ATCTGCCGCG CTCGACACGC
GGCCACACCA TCGCGGGCAT GGTGATTATT GCGACGACGA TCATGGGATT TGGAGTCTGG
GGCAATACTG CACCGATCGC GGGTGCAGTG GTGGCGTCGG GCGTGTTTGT GGCTACCGGC
CAGAACAAGA CCATCCAGCA CCTGGAAGGT GGCGTGATCA GCGACATCAT GGTTCACGAG
GGCGATACCG TGGAACCCGG TCAGATACTG GTCAAGCTGG ACCGGACCAC CGCAAAAGCC
GAGATGCAAC GGCTCTTCCT TCGCAACGCG CGGCTCACGG CCGTCGATGC CCGCCTGCAG
GCGCAAGTCC GCGAGGAAGC GGAAGTTAAC TTCCCGCCTG ACTTGGCGCC CGATTCAAAG
GATCCGCAAA TACGCAGCAT CGTCAGCGCC CAGCTTCTGG CCTTCACCGC TCAGCGCAAC
AATACCAACA GCGAAATTGC CGGAATTGAG GACAGCATCA AGGCGCTGAA CGAGCGCATC
GCCGGATCCA AGGTTCAACT CGCAGGCGTG AGGCGCCAGA TCGCGCTTGT CGAAGAGGAC
ATCAAGACCA AGGAACACCT GCTGGCCGCA GGACTCGTTC GCAAGCCTGA CGTTCTTCTT
CTGCAACGCA ACCAGGCCAA TCTCGAAGGC GAGGTCGGCC GTATCATGGG CGATATCGGC
GACGCCAAGG AACGGATCGC TCGCGCGGTC GAGCAGATCA ATGGCGTGCG GAAGACCGCC
ATCAAAACCG CGGTCGAGCA GATGCACGAA GCGCGCGGCG AACTGGTCGA CGTCCGCGAG
CGGATGCTGA GCGCTAGAGG CGTTCTCGAC CGAACCACGA TCCGCGCGCC GGTCAAAGGC
GTCGTCGTCA AATTGCGATT CCATACGCGC GGCGGGGTGG TCGAGCCGGG CAAGCCCATC
ATGGAGTTGT TGCCGCTCAA CGAGCCATTG ATCATCGAGG CCCGGGTGAG ACCGCAGGAT
ATCGACTCGG TCAAGCACGG TCAGGAAGCC ATGGTTCGGC TGACGGCGCT CAGCCAGCGT
GTCACGCCGA TGGTTTCGGG AGACGTCATC TACCTCTCCG CCGATACCGT CGCCGACGAG
AAAAAGTCGC AACAGCTCGG GCCGAGCGAC ATCTATGTGG TGCGCGTGAG GCTTCACAAT
TCGGAAGTCG CGGCAATCCA CGGTTTCAAT CCGACGCCAG GCATGCCCGC CGAAGTCTTC
ATCAAGACCA GCGAACGGAC TTTCTTTCAG TACATCATGA AGCCGATCGA GGACAGCATG
TCCCGAGCGT TTCGCGAGAG ATAG
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| Protein sequence | MSTTMTGDQP WHVDLPRSTR GHTIAGMVII ATTIMGFGVW GNTAPIAGAV VASGVFVATG
QNKTIQHLEG GVISDIMVHE GDTVEPGQIL VKLDRTTAKA EMQRLFLRNA RLTAVDARLQ
AQVREEAEVN FPPDLAPDSK DPQIRSIVSA QLLAFTAQRN NTNSEIAGIE DSIKALNERI
AGSKVQLAGV RRQIALVEED IKTKEHLLAA GLVRKPDVLL LQRNQANLEG EVGRIMGDIG
DAKERIARAV EQINGVRKTA IKTAVEQMHE ARGELVDVRE RMLSARGVLD RTTIRAPVKG
VVVKLRFHTR GGVVEPGKPI MELLPLNEPL IIEARVRPQD IDSVKHGQEA MVRLTALSQR
VTPMVSGDVI YLSADTVADE KKSQQLGPSD IYVVRVRLHN SEVAAIHGFN PTPGMPAEVF
IKTSERTFFQ YIMKPIEDSM SRAFRER
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