Gene Nham_2907 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_2907 
Symbol 
ID4032716 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp3198102 
End bp3199361 
Gene Length1260 bp 
Protein Length419 aa 
Translation table11 
GC content67% 
IMG OID637971353 
Productlytic murein transglycosylase 
Protein accessionYP_578135 
Protein GI92118406 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2951] Membrane-bound lytic murein transglycosylase B 
TIGRFAM ID[TIGR02283] lytic murein transglycosylase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00384292 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGGCGA TCGGCTGGAA CGCTCTGCGG CGGCTGCGGC TTGCGATCGC GATCATGGTC 
GCGCTCGCTC TTGGAGCCGG AGTGCCGCCG GCGCACGCGG CGGACGCCGG TTTTGCGCGT
TTCATCGCCG CGATCTGGCC CGAGGCGCAG CGGGCGGGCG TCTCACGCGC AACCTTCGAC
TCCGTAACGA CAGGGCTCGA ACCCGATTAC AAACTGCCCG ACCTGATCCT GCCCGGTCGG
CCCGCGACCG GCGCGCCGTC GCAGGCGGAA TTCGTTCAGG TGCCGGCGGA TTACCTCAAG
GAGAAGAGCA TCGCGCGGCT GGCGGCCCAG GGGCAGCGGC TGATGCAGAC ATACGGGCCG
ACGCTGAACG CGATCGAAAA GCGCTTCGGC GTACCCGCAA CCATCATCCT TGCCATCTGG
GGCCGCGAGA CCGACTACGG CCGCTACGCG CTGCCTTACG ATGCGATGCG CGTGCTGGCG
ACACAGGCCT ATGTCGGCCG CCGCAAGGAG CAGTATCGCA CCGAATTCAT CGACGGGCTG
CTGCTATTGC AGCGCGGAGA CGTCTCGCGC AAGAATTTCC GCGCGTCGTG GGGCGGCGCC
ACCGGCCTCA CGCAATTCCT GCCGTCCGAA CTTGCCAAAC ATGGCGTCGA TTTCGATGGC
GACGGCCGCG TCGATATCTG GACCTCGGTG CCCGACGCGC TGGCCTCGGC CGCGCAGCAA
CTCGTCAACA AGGGTTGGCG GCCAGGGTTG CGCTGGGCCT ATGAGGTACG CGCGCCGGCG
AACGTCGATT GCACGGAAGG CGTGCCGGAG GTGACGAAGC CGATCGGCGA ATGGCTGCGC
GAAGGGTTTT TGCCGGTTCG CGGGCAAAAG CTGACCGCGG CCGAGCGGGC GCAACCGGCG
TCGCTATTGC AGCCGGAAGG CATCTATGGC CCGTCGTTCC TGACCACGAA GAACTACTTC
GTGATCAAGG AATACAATTT CTCCGACCTC TACGTGCTGT TCGTCGGCCA TCTCGCCGAC
CGCATGACCA GTCCGCTGCC GTTCGCGACG CCGTGGTCGG CTTCGACGCA ATTGCGCAGC
CGCGACGTCG AGGCGATGCA GCGCCATCTG ACGCGGATCG GCCTGTACAA GGACAAGATC
GACGGCAAGG CGGGGATGCT GACGCGCGCG GCGCTCGGCG CCTACCAGAA ATCGGCCGGT
CTCAAAGTTG ATTGCTGGCC CAGCGACGCG GTGCTGCGTG CGATGAGCGC GGCGCGCTGA
 
Protein sequence
MAAIGWNALR RLRLAIAIMV ALALGAGVPP AHAADAGFAR FIAAIWPEAQ RAGVSRATFD 
SVTTGLEPDY KLPDLILPGR PATGAPSQAE FVQVPADYLK EKSIARLAAQ GQRLMQTYGP
TLNAIEKRFG VPATIILAIW GRETDYGRYA LPYDAMRVLA TQAYVGRRKE QYRTEFIDGL
LLLQRGDVSR KNFRASWGGA TGLTQFLPSE LAKHGVDFDG DGRVDIWTSV PDALASAAQQ
LVNKGWRPGL RWAYEVRAPA NVDCTEGVPE VTKPIGEWLR EGFLPVRGQK LTAAERAQPA
SLLQPEGIYG PSFLTTKNYF VIKEYNFSDL YVLFVGHLAD RMTSPLPFAT PWSASTQLRS
RDVEAMQRHL TRIGLYKDKI DGKAGMLTRA ALGAYQKSAG LKVDCWPSDA VLRAMSAAR