Gene Nham_2638 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_2638 
Symbol 
ID4032838 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp2898388 
End bp2900550 
Gene Length2163 bp 
Protein Length720 aa 
Translation table11 
GC content65% 
IMG OID637971092 
Productmethylmalonyl-CoA mutase 
Protein accessionYP_577879 
Protein GI92118150 
COG category[I] Lipid transport and metabolism 
COG ID[COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit
[COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) 
TIGRFAM ID[TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGATGA CCCGCATTCC GAATTTCGCC GATGTCGCCT TCGCGCCGGT CGCGGCGCCC 
GCCGCCGCCG GCAATGCAGA ACCGTGGCTG ACACCCGAGG GCATCCCGGT CAAATCCACC
TACGGCGAAA CCGACCTCGA TGGCATCGAC TTCCTCGACA GATGGTCCGG CATCGCGCCT
TACTTACGCG GTCCCTACCC GACCATGTAT GTCAACCAGC CCTGGACCAT CAGGCAATAT
GCGGGGTTCT CGACGGCCGA GGATTCCAAC GCCTTCTATC GCCGCAACCT CGCCGCCGGC
CAGAAGGGAC TGTCGGTCGC GTTCGACCTC GCCACCCATC GCGGCTACGA CTCGGATCAC
CCCCGCGTGT CGGGCGACGT CGGCATGGCG GGCGTCGCTA TCGACTCCAT CTACGACATG
CGCACGCTGT TCGCCGGCAT CCCGCTCGAC CGGATGAGCG TGTCGATGAC CATGAACGGC
GCGGTGCTGC CGATCCTGGC GCTGTTCGTC GTCGCCGCCG AGGAACAGGG CGTGCCGCCT
TCGAGCCTGT CGGGCACCAT CCAGAACGAC ATTCTCAAAG AATTCATGGT GCGCAACACC
TACATCTATC CACCTGCACC CTCGATGCGG ATCGTCTCCG ACATCTTCGC CTACACCTCC
CGAAAGATGC CGAAGTTCAA CTCCATTTCC GTCTCCGGCT ACCACATGCA GGAAGCCGGC
GCGACGCAGG ACCTCGAGCT CGCCTATACG CTTGCCGACG GCGTCGAATA TGTCCGAGCC
GGACTCGCGG CCGGGCTCGA TATCGACCGT TTCGCGCCGC GGCTGTCGTT CTTCTGGGCG
ACCGGCATGA ACTTCTTCAT GGAAGTCGCC AAGATGCGCG CCGCGCGGCT GCTGTGGGCC
AAGCTCATGA AGCCCTTCAA TCCGAAGAAT CCGCGTTCGC TCTCCTTGCG CACCCATTGC
CAGACCTCCG GCTGGTCGCT GACCGCGCAG GACGTCTTCA ACAACGTGAT CCGCACCGCG
ATCGAGGCGA TGGCGGCGAC GCAAGGTCAC ACCCAGTCGC TGCACACCAA CGCGCTCGAC
GAGGCGCTGG CGCTGCCGAC CGACTTCTCC GCCCGCATCG CCCGCAATAC CCAGCTTTTC
CTGCAGCACG AGAGCGGCAC CACGCGCATC ATCGATCCCT GGGGCGGCTC CTATTATGTC
GAGCGGCTCA CGCATGATCT CGCCGTGAAG GCGTGGGGCC ATATCCGGGA AGTCGAGGAA
CTCGGCGGCA TGGCCAAAGC CATCGAGGCC GGCATACCGA AGCTACGCAT CGAGGAGGCG
GCCGCCAGGA CGCAGGCGCG GATCGATGCC GGCAAGCAGG CGGTAATCGG CGTCAACAAA
TACAGGCCGG AGAACGAGGC GCCGATCGAC GTGCTGAAGG TCGACAATTC GACGGTGCGG
CGCTTGCAGA TCGACAAGCT GAAACGGTTG CGCAGCGAGC GCAAGCAGGA AGACGTCGAT
GCCGCCCTCG CGGCGCTAAC GCGCTCGGCC GGCGACGGCA ACGGCAACCT GCTGGCGCTC
GCCATCGACG CGGCGCGCGC CAAGGCCACC GTGGGCGAAA TTTCCGACGC GATGGAGAAG
GTGTTCGGCC GGCATCGCGC CGAAATCAGA TCCATCACCG GGGTTTACAA GCGTGAGGCG
GCCGCCATGT CCGACAAGGT TTCGAAAGTG CAGGCGCTGA TCGACGCCTT CGAGGAGGCC
GAGGGCCGCC GCCCGCGCAT CCTCGTCGCC AAGATCGGCC AGGACGGCCA CGACCGCGGC
CAGAAGGTGA TCGCGTCCGC CTTCGCCGAT ATCGGCTTCG ACGTCGATAT CGGACCGTTG
TTTGCAACAG CGGAAGAAGC CGCGCGGCAG GCGGTGGAAA ACGACGTGCA CATCCTTGGC
GTGTCCTCGC TCGCCGCCGC GCACTTGACC ACCGTGCCGG AATTGAAGGC CGCGCTGAAA
AGCCACGGCC GTGACGACAT CATGATCATC GTCGGCGGCG TGGTGCCGCC ACAGGACTAC
GACGCGCTCT ATAAGGCCGG CGCCGAAGCG ATCTTCCCGC CGGGTACGGT GATCGCCGAG
GCGGCGGAAG AATTGATCCG CAAGCTCAAC GCGCGGCTCG GCCACAACGA GGCGGCGGGG
TAG
 
Protein sequence
MTMTRIPNFA DVAFAPVAAP AAAGNAEPWL TPEGIPVKST YGETDLDGID FLDRWSGIAP 
YLRGPYPTMY VNQPWTIRQY AGFSTAEDSN AFYRRNLAAG QKGLSVAFDL ATHRGYDSDH
PRVSGDVGMA GVAIDSIYDM RTLFAGIPLD RMSVSMTMNG AVLPILALFV VAAEEQGVPP
SSLSGTIQND ILKEFMVRNT YIYPPAPSMR IVSDIFAYTS RKMPKFNSIS VSGYHMQEAG
ATQDLELAYT LADGVEYVRA GLAAGLDIDR FAPRLSFFWA TGMNFFMEVA KMRAARLLWA
KLMKPFNPKN PRSLSLRTHC QTSGWSLTAQ DVFNNVIRTA IEAMAATQGH TQSLHTNALD
EALALPTDFS ARIARNTQLF LQHESGTTRI IDPWGGSYYV ERLTHDLAVK AWGHIREVEE
LGGMAKAIEA GIPKLRIEEA AARTQARIDA GKQAVIGVNK YRPENEAPID VLKVDNSTVR
RLQIDKLKRL RSERKQEDVD AALAALTRSA GDGNGNLLAL AIDAARAKAT VGEISDAMEK
VFGRHRAEIR SITGVYKREA AAMSDKVSKV QALIDAFEEA EGRRPRILVA KIGQDGHDRG
QKVIASAFAD IGFDVDIGPL FATAEEAARQ AVENDVHILG VSSLAAAHLT TVPELKAALK
SHGRDDIMII VGGVVPPQDY DALYKAGAEA IFPPGTVIAE AAEELIRKLN ARLGHNEAAG