| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_2077 |
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| Symbol | |
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| ID | 4031251 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | - |
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| Start bp | 2309875 |
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| End bp | 2311995 |
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| Gene Length | 2121 bp |
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| Protein Length | 706 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637970534 |
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| Product | penicillin-binding protein 1C |
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| Protein accession | YP_577334 |
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| Protein GI | 92117605 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
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| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.145944 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGCAT CCGACACCAC GGCACCGACG ATACAACCGC GCCGCTGGCG GCGGGTGAAG
CTGGCAGCGG CGGTCGTCGC GGTCATAACC GTCGTAACCG CCGGCGCGAT TGCGAGCTGG
ATCGTTTCGC TCGGGCCGCT CCCGCTGGCG AAGGCGCGCG AGGTCTCGAC GACGGTGCTC
GACCGCAACG GTAAATTGCT CCGTGCTTTC GCCATGGCCG ACGGCAGGTG GCGATTGCCG
GTCGATGCCA GGACCGATGT CGATCCGGGA TATCTCAACC TGCTGCTGGG CTATGAGGAC
CAGCGTTTCT ATTCGCACAC GGGCGTCGAT CCGCTCGCGC TCGGCCGCGC CGCGTTGCAA
CTCCTGACGC GCGGTCACAT CGTCTCGGGC GGATCGACCA TCACCATGCA GCTCGCCCGG
CTGATCGAGC CGCGCCGCCG GCGCTCGATC TACGCCAAGC TGCATCAGGT GGTGCGCGCG
TTCCAGCTCG AGCACGAACT CTCCAAGGAT GAAATCCTCA ACCTGTATCT GGCGCTTGCG
CCGTTCGGCG GCAATCTCGA AGGCATTCGC GCGGCGTCCA TTGCCTATTT CGGCAAGGAG
CCGAAGCGGC TGTCGCTGGC GGAGTCGGCG CTGCTCGTGG CCTTGCCGCA ATCGCCGGAA
AGGCGCCGTC TCGACCGGCA CCCGACGGCT GCGCGCGCAG CCCGCGACCG CGTGCTCGAA
CGCATGGTCG AGGAATCGCG TATCTCGGCG GAAGATGCCG CGCAGGCCAA GGCTGTGCCG
GTCATGCGCA TGCGCAAACC ATTTCCGATG CTGGCGCCGC ATTCGGCGGA TAGGGCTCTG
GCGACGGTCA GGGATTCGAG TGTCATTCGA CTCACGCTTG AGTCCGGATT GCAGCGAACG
CTCGAAGCGC TGGCGCGCGA CCGTGCGGGG GCGCTCGGGC CGGACATTTC GATCGGCATC
ATCGCGGTCG ACAACGCCAC CGGCGATGTG CTGGCCCATG TCGGGTCCGC AGATTATTTC
AACGAGCGAC GCGCCGGGCA GGTGGACATG ACCCGGGCCG TGCGCTCGCC GGGATCGACG
CTGAAGCCGT TTATCTACGG ACTGGCGTTC GAAGACGGCT TCGTTCACCC GGACAGCCTG
ATCGACGATC GCCCGGTCCG GTTCGGCAGT TACGCGCCGG AAAACTTCGA CATGACGTTC
CAGGGCACGG TGGCGGTGCG CCGCGCCCTG CAATTGTCGC TCAATGTTCC GGCGATCGAA
CTGCTCGACC GCGTCGGCGC CAGTCGGTTG TCGTCGCGGC TGAAACAGGC GGGCGCCGAT
CTCGTGCTTC CGAAGGACGA AGCCCCGGGT CTGGCGATGG GACTCGGCGG CGTCGGAGTG
ACCCTGCATG ATCTGGTGCA GGCCTATTCC GGCATCCCCA GGCTGGGCAG CGTGATGCCC
TTGCGTGAAA TCGAGCGCGG CGGCGGCAGC GTTCGGGAGC CTTTGCGACT GCTGGATCCG
GTCGCGGCAT GGCAGGTCGG CAATGTTCTT TTGGGGACAC CACCGCCGGA AAACGCGGTC
CGGAACCGGA TCGCTTTCAA GACCGGCACC AGCTACGGCT ATCGCGATGC GTGGTCCGTC
GGCTTCGACG GCCGCGTGAC GATCGGCGTC TGGGTCGGGC GCCCGGACGG CGCGCCGGTG
CCGGGTCTGG TCGGGCGTGT GGCAGCCGCG CCGGTTTTGT TCGATGCTTT CGCCCGTACC
GGCAAGTTGC TGGCGCCGCT GCCAAAAGCT CCGCGTGGAA CCCTGATCGC CAGCAATGCA
AAACTCCCGC TTCCCTTGCG GCGGTTTCGT CCCGCGGGCG AACTCATCCG GGTCGGCAAT
AAGCACACGC TCCATATCCA GTTTCCACTG AACGGTTCGC GGATCGATGC CGGAGGAGGG
GGCGGGATAA AGCTCTCCGC GCTACCGGTG AAAGTGGCGG GCGGCGTTTT GCCGATGACG
ATGCTGGTCA ATGGGGTTGC GGTCGGGGAG ATCGACGGCC GCCGCCAGCG GATCATCGAT
CCCCCCGGGC CGGGATTCGT TCGGCTGACC GTGATGGACG CGGCTGGCAG CGCGGACACA
GTTACCGTCA GAATTCAATA G
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| Protein sequence | MTASDTTAPT IQPRRWRRVK LAAAVVAVIT VVTAGAIASW IVSLGPLPLA KAREVSTTVL
DRNGKLLRAF AMADGRWRLP VDARTDVDPG YLNLLLGYED QRFYSHTGVD PLALGRAALQ
LLTRGHIVSG GSTITMQLAR LIEPRRRRSI YAKLHQVVRA FQLEHELSKD EILNLYLALA
PFGGNLEGIR AASIAYFGKE PKRLSLAESA LLVALPQSPE RRRLDRHPTA ARAARDRVLE
RMVEESRISA EDAAQAKAVP VMRMRKPFPM LAPHSADRAL ATVRDSSVIR LTLESGLQRT
LEALARDRAG ALGPDISIGI IAVDNATGDV LAHVGSADYF NERRAGQVDM TRAVRSPGST
LKPFIYGLAF EDGFVHPDSL IDDRPVRFGS YAPENFDMTF QGTVAVRRAL QLSLNVPAIE
LLDRVGASRL SSRLKQAGAD LVLPKDEAPG LAMGLGGVGV TLHDLVQAYS GIPRLGSVMP
LREIERGGGS VREPLRLLDP VAAWQVGNVL LGTPPPENAV RNRIAFKTGT SYGYRDAWSV
GFDGRVTIGV WVGRPDGAPV PGLVGRVAAA PVLFDAFART GKLLAPLPKA PRGTLIASNA
KLPLPLRRFR PAGELIRVGN KHTLHIQFPL NGSRIDAGGG GGIKLSALPV KVAGGVLPMT
MLVNGVAVGE IDGRRQRIID PPGPGFVRLT VMDAAGSADT VTVRIQ
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