| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1848 |
|---|
| Symbol | |
|---|
| ID | 4033025 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 2057586 |
|---|
| End bp | 2058857 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637970320 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_577122 |
|---|
| Protein GI | 92117393 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTCAA AATTCGCCGT GCGTCTTGCG TGGGCGATGG CATTGCTGGT CAGCCCCTGG
CTGACGGTAC CGTCGCATTC GCAACCGCTT ACGTTGAAGA CCGCACTTCA ACGCGCGCTC
GCCGCCAGCC CGCGTCTGAC CGCCGCCGAG CGCGACGTCG GCATCGCGAC CGGCCAACGC
ATCCAGGCCG GTGCGCTGAT CAATCCCGAA GTATCCTATG AGCAGGACAA CTCGTTCGGC
TCCAGAGGCT ATCGCGGAAC GAAGTCGGCC GAGACCACGC TACAGATCAG CCAGCTATTC
GAGCTATTCG GCAAGCGCGA TGCGCGAATT GCCGTCGGCC GCGCCGGCAT TGAGACCGCG
GCCATCCAGC GCAAGGCCGT TCGCCTCGAA GTTCTGTCGG AGACGGCCGT CGGCTTTCTG
GGCGTCCTCG GCGCGCAGCG CAGAATCCAG ATCCTGGACG AGCAGGTCGC CGCAATCGAC
AAGTTGACGC CGTTGTTGCA GCGGCGGGTG GACGCCGGCG CTTCGTCACC CGCCGAAATC
GGCCGGGCGG AAGTCGCATC CGCATTGGTG AAAGCAGACC GCGAGCGGGT TCGCTCGACG
CTTGCCAGCG CCCGGCGCGA ATTGGCGGTG CTGATGGGAG ACACCGCAGC AAAGTTCTCG
GCTGTTTCCG GGCGACTGGA CGTTCTGGGC CGGCCTCCGT CTTTTAAGGC CGTCGTCGCT
GCGATCGATT CAAATCCGCA ACTGATGCGT TGGACCGCGG TCTACGCGCA GCGCAACGCC
GAACTTCTGC TGGCGCGGCT GAAGCCCTAT CCGGACGTTC GCGTCAGCGC CGGCTGGCGC
CATTTCAACG AGACCAACGA CGACGCAGTC AGGCTCTCGC TGTCCGTTCC CATTCCGGTT
TTCGACCAGA ACCAGGGCAA CATCCTGTCC GCTCAGGAAA GCCTCGCGAA GACCCGGGCC
GAGCGCGAAG CCAATCGCAA CACGCTGATC GTGCTCGCCG GCCGTGCCTA CGATTCGCTG
CAGGGCGCGT TGCGTGAGCT GAAAGTGCTG CGCGAAGTTG CGATCCCGAA GTCGCGCCAG
GCCGCCGATG CGATCTTCGA GGGGTACGGG CAGGGGCGCT TCACGTTGCT CGAAGTTCTG
GATGCGCAAG CAAGCGTCGC TCAGGCGCGC CTGCGCGAGC AGGAGGCCCA GCAGAATTTC
CACGTCGCCG TCGCCACCAT CGAGGGGCTT GTCGGCAATC CGTTCACATT GGCTCGGGAG
ACCGCTCGAT GA
|
|---|
| Protein sequence | MLSKFAVRLA WAMALLVSPW LTVPSHSQPL TLKTALQRAL AASPRLTAAE RDVGIATGQR
IQAGALINPE VSYEQDNSFG SRGYRGTKSA ETTLQISQLF ELFGKRDARI AVGRAGIETA
AIQRKAVRLE VLSETAVGFL GVLGAQRRIQ ILDEQVAAID KLTPLLQRRV DAGASSPAEI
GRAEVASALV KADRERVRST LASARRELAV LMGDTAAKFS AVSGRLDVLG RPPSFKAVVA
AIDSNPQLMR WTAVYAQRNA ELLLARLKPY PDVRVSAGWR HFNETNDDAV RLSLSVPIPV
FDQNQGNILS AQESLAKTRA EREANRNTLI VLAGRAYDSL QGALRELKVL REVAIPKSRQ
AADAIFEGYG QGRFTLLEVL DAQASVAQAR LREQEAQQNF HVAVATIEGL VGNPFTLARE
TAR
|
|---|
| |