| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1822 |
|---|
| Symbol | |
|---|
| ID | 4032999 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 2022991 |
|---|
| End bp | 2026110 |
|---|
| Gene Length | 3120 bp |
|---|
| Protein Length | 1039 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637970294 |
|---|
| Product | ribonuclease |
|---|
| Protein accession | YP_577096 |
|---|
| Protein GI | 92117367 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1530] Ribonucleases G and E |
|---|
| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAACA AGCCCAACAA AATGTTGATC GACGCCACCC ACCCGGAGGA GACCCGGGTC
GTCGTGGTCC GCGGCAACCG CGTCGAGGAA TTTGATTTCG AATCTGCCCA GCGCAAACAA
CTGCGCGGCA ACATCTATCT GGCCAAGGTC ACCCGCGTCG AGCCTTCGCT GCAAGCCGCA
TTTATCGAAT ACGGCGGAAA CCGGCACGGT TTCCTTGCGT TCAGCGAAAT CCATCCTGAC
TACTATCAAA TTCCGGTCGC CGACCGTGAG GCGCTGATCG AAGCCGACGA GCGCGCGCAC
CGCGAGGCGG AGGAAGAGTC GGAAGATCGC TCCAGCCGCC GCCGTTCGCG GCATCGCAAC
TCGCGTCGAC GCGATCACGG CGAACGCGTG CAAAGCGCCA TTGTCGAGGA TGCGGCCCAG
CAGGATGCAG GAGCAGACGC GTCGCCGTTC AGTCCGGCTC ACGATGATCA TCCCCACGAG
GATGACGCGG ATCACGATCA TCCCCACGAA TTCGATCATC CCCACGACGA TGACGCGGAC
CACGATCACC CGCACGAGCA TGCGCACAAC GACGACATTG GGCACAGCCA GCCGTACGGC
TCCGATCATC ACGACATCGA CGCCGACCAC CCACACGGGT CGCACGACAT CGCTTTCGCG
CAAAACCCAG ATCAAGACCC GGATGATGTC GTCAGCGAGC ATCGCGACGA GACGCATGAT
GACGCCGCCG AAGCCCCGGT CGTGGCAGCA TCGGATCACG CGACCGGCTT CGAGCCGCCC
GCCCATGCCG ATGACGATCA TGTCGAACCG GCCATCTCCC CCGATGCGGA TCATGCTCTC
GAAGCGCACG ATGAGGCACA CGATCATGAG TCGGGCGACC ACAACGACCA CAACGGCCAG
CCTCATGAGG TCGAATTCCA TGACGAGGAG GCCCACGCCG AGGATGACGA TGACGCCGAG
GAAGACGAGC AGGTCGAATC CGTCGGCGGT GACGATGCGC TGGAGGAAGT ACCCGAGCGC
GCCTACCGGC CACGCCGTCA GTACAAAATT CAGGAAGTCA TCAAACGCCG CCAGGTGATG
CTGGTGCAGG TGGTCAAGGA GGAGCGCGGC AACAAGGGCG CGGCGCTGAC GACCTACCTG
TCGCTGGCCG GCCGCTATGC CGTGCTCATG CCCAATACCG CGCGCGGCGG TGGCATCAGC
CGCAAGATCA CCTCGGCGCA GGACCGTTCG CGGCTGAAGG ACGTGGTGCA GGACCTCGAC
GTGCCCGAGG GCATGGGAGT CATCCTGCGC ACCGCCGGCG CTTCGCGCAC CAAGCCGGAG
ATCAAGCGCG ACTTCGAGTA TCTGATCCGC ATGTGGGAAA CCGTGCGCGA CATGACCCTG
CAGTCGCAGG CCCCGACACT CGTCTACGAG GAAGGCTCGC TGATCAAGCG CTCTCTGCGC
GATCTCTACA ACAAGGAAAT CGACGAAATC CAGGTGGCCG GTGAAGGCGG TTATCAGGAG
GCGCGCGATT TCATGAAGAT GCTGATGCCA ACCAACGTCC GCGCGGTGAA GCAGTATCGC
GACTGCCAGC CGTTGTTCTC GCGCATGGGC GTCGAAAGCC AGCTCGATGC GATGTTCTCG
CCGACGGTGC AGCTTCGCTC CGGCGGATAC ATCGTCATCA ACCAAACCGA AGCGCTGGTG
TCGATCGATG TCAACTCGGG CCGTTCGACC CGCGAACATC ACATCAAGGA TACGGCGCTC
AAGACCAATC TCGAGGCCGC CGAGGAGGTC TCTCGACAGT TGCGATTGCG CGATCTCGCC
GGCCTGATCG TCATCGACTT CATCGACATG GACGAGAAGC GCAGCAACCG CGCGGTGGAG
CGCAAGCTCA GCGACTGCCT GCGCCACGAC CGCGCGCGCA TCCAGGTCGG ACGCATCTCG
CACTTCGGTC TTCTGGAAAT GTCGCGCCAG CGCATTCGCG CCAGCATGCT GGAAAGCTCG
ACGGAGCCCT GCCAGCATTG CGGCGGCAGC GGCCACGTCC GCTCGGTTCC ATCGGTGGCG
TTGCAGTTGC TGCGAAGCCT CGAGGAAGTT CTGATGAAAG GCGCGACGCA CGACCTTGTC
GTGCGGACAC GCACTAACGT TGCGTTGTAT GTGCTCAATC AAAAACGCGG CCATCTGCGC
GACCTCGAAC ACAGCTTCAA GGTCGGTCTT TCCGTGGTCT CCGATCCCTC GATCACCGGC
CAGCAATCCT TCATCATTGA TCGCGGCGAG CAGGTGCATA CGCTGGAGGC GGCGAAAGCG
CTGCTGGCCG CACAACTGGC CGCATCCCCA CCGCAGGCCG AAGAGGCCCA CGAGGATGAG
CAGCCACTCG ATATCGAAGT CGAGATCGAG ACCGGCGATA CCGAGAGCCG CCCCGATGAA
CAAGCGGGTG GCGAAGCCGA GGGCGATGGC CGTAAGCGCA GGCGCCGCCG GCCCCGGCGT
GAACGTTCCG GAGAAGCCCG CGACGACCAG GCCGCGCACG GCGACGAAGG CTCAGACAGT
GTCCAGATCG CGGCCGATTT CGCCGCGGCA CGCTTTATGA CCGGCGACGT CGAAAATGAC
GGAGATGACG CCGGAGTTCA GGGTGCCGGA GGTCAGGACG GCGAAGCGCA GGCCGATCAG
TCTCCGGACG GAGAATCGCG CCCACGTCGT CGTGGACGTC GTGGCGGTCG TCGGCGTCGC
GGTAGCGCTG ACGCCGGACT TGTCGGCTCG ATTTCCGACG AACTCGGCCC TCCCTCAGCG
CCTGAGGTCG TCGAAGCCGT CGCGGACTTC GATTCGGTAC CGATCGCCCC TGAACCGCAG
GCCGGCTCGC CCGACGTCGA AACTCAGCCG CAACACACCG CGACGCAGCC GGAAATGACA
AGCCCTCCGG TTGAGGCCAG GGATGAAGCC ATCTCGGAAT CCGAAAAAGC CGTTCGCCGC
CGCTCGACGG TGCGCGAGAA GGTGAGCTTC GCCTCGGCAG AGGCGCCGCC GGTAGCACCC
GTCGCTCAAA GCCAGCCGGA ACCATCGGCG CCTGAGCCGC AACAGCCTGC AGAAGCATCG
GACGAAGGTC GGCCGCGCCG TGCGGGGTGG TGGTCGCGTC GGTTCGGCAG CGGCACCTGA
|
|---|
| Protein sequence | MSNKPNKMLI DATHPEETRV VVVRGNRVEE FDFESAQRKQ LRGNIYLAKV TRVEPSLQAA
FIEYGGNRHG FLAFSEIHPD YYQIPVADRE ALIEADERAH REAEEESEDR SSRRRSRHRN
SRRRDHGERV QSAIVEDAAQ QDAGADASPF SPAHDDHPHE DDADHDHPHE FDHPHDDDAD
HDHPHEHAHN DDIGHSQPYG SDHHDIDADH PHGSHDIAFA QNPDQDPDDV VSEHRDETHD
DAAEAPVVAA SDHATGFEPP AHADDDHVEP AISPDADHAL EAHDEAHDHE SGDHNDHNGQ
PHEVEFHDEE AHAEDDDDAE EDEQVESVGG DDALEEVPER AYRPRRQYKI QEVIKRRQVM
LVQVVKEERG NKGAALTTYL SLAGRYAVLM PNTARGGGIS RKITSAQDRS RLKDVVQDLD
VPEGMGVILR TAGASRTKPE IKRDFEYLIR MWETVRDMTL QSQAPTLVYE EGSLIKRSLR
DLYNKEIDEI QVAGEGGYQE ARDFMKMLMP TNVRAVKQYR DCQPLFSRMG VESQLDAMFS
PTVQLRSGGY IVINQTEALV SIDVNSGRST REHHIKDTAL KTNLEAAEEV SRQLRLRDLA
GLIVIDFIDM DEKRSNRAVE RKLSDCLRHD RARIQVGRIS HFGLLEMSRQ RIRASMLESS
TEPCQHCGGS GHVRSVPSVA LQLLRSLEEV LMKGATHDLV VRTRTNVALY VLNQKRGHLR
DLEHSFKVGL SVVSDPSITG QQSFIIDRGE QVHTLEAAKA LLAAQLAASP PQAEEAHEDE
QPLDIEVEIE TGDTESRPDE QAGGEAEGDG RKRRRRRPRR ERSGEARDDQ AAHGDEGSDS
VQIAADFAAA RFMTGDVEND GDDAGVQGAG GQDGEAQADQ SPDGESRPRR RGRRGGRRRR
GSADAGLVGS ISDELGPPSA PEVVEAVADF DSVPIAPEPQ AGSPDVETQP QHTATQPEMT
SPPVEARDEA ISESEKAVRR RSTVREKVSF ASAEAPPVAP VAQSQPEPSA PEPQQPAEAS
DEGRPRRAGW WSRRFGSGT
|
|---|
| |