Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nham_1575 |
Symbol | |
ID | 4033052 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrobacter hamburgensis X14 |
Kingdom | Bacteria |
Replicon accession | NC_007964 |
Strand | + |
Start bp | 1778752 |
End bp | 1779987 |
Gene Length | 1236 bp |
Protein Length | 411 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637970050 |
Product | pseudouridine synthase, RluD |
Protein accession | YP_576856 |
Protein GI | 92117127 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.286446 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCGCC GCGTCAAAAG ACCTCTCGCG AAATCCCGCG GCCCGGGCAG CGCGCGCCCC AAGGGTGCGA GGGCCAAAGC TGCCCGGCCC AAAGGGACGC GGTCGGCTGG GCGTGGCGTG GCTGAGCGTT TTCAGGGCGA GCGGTGGCAG GGGGGGCGGC CTGACAAGCC GCCACGCGTA GCGGCGCCTC GCGATTCCGT GCCCGTCATC GAACCGCCGG CCAAACCCGA GCCGGCGCCG CTACCGACGA AAGTGCAGAC CGTCGCCGTG ACCGCCGACG AAGCCAACAT GCGCGTCGAT CGCTTTCTTG AAGCGCGCTT TCCCGGCCTG TCGTTTTCCC ATATTCAGCG CGTCGTCCGC AAAGGCGAGT TGCGCGTGAA CGGCAAGCGC GCCGACAGCA AGGATCGCCT GGGCGAAGGC GATAAGGTCC GCATCCCGCC GCTCAAGCTC GACACGCCGA AGGTCGCGGC GGGCCTGTCC GAGGCCGAGA CAAAGATACG CGACGAACTG CAGAAGATGG TGCTGTTCGA GGATGCCGAC GTCATGGTGC TGAACAAACC GGCCGGTCTT GCGGTGCAGG GCGGCTCCGG CCTGTCGCGG CACATAGACG GCATGCTTGA AGTGATGTGC GACGCGAAAG GTCAGCGCCC GCGCCTCGTG CATCGGCTGG ATCGCGAGAC GGCCGGCTGC CTGCTGGTGG CCAAGACGCG GTTTGCGGCG ACCGCCCTGA CAGGGTCGTT CCGCCATCGC TCGGCGCGCA AGATTTATTG GGCGCTGGTC GCGGGCGTGC CGAAGCCGAA GCAGGGTCGC ATCTCGACCT ATCTCGCCAA GGAAGAGAGC GAGGAGGATT CAATCATGCG GATCGCCGCG CATGGCGACG AAGGCGCGAG CCACGCGGTG ACCTACTACG CGGTGGTGGA AACCTCGGCG CAGAAGCTCG CCTGGGTTTC GCTGAAGCCC GTCACGGGCC GGACCCATCA ACTCCGCGCG CATATGGCGC ATATCGATCA CGCCATCGTC GGCGATCCAA AATACTTCAA TAAGGAAAAC TGGCAATTGC CGGGCGGTCT TCAGAAGCGG CTGCATCTCC TGGCGCGCCG CATCGTGATC CCGCATCCGC GCGGCGGCGT CATCGATGTC ACCGCGCCGC TGCCGCCGCA CATGCTGCAA TCCTGGAATC TGCTCGGCCT CGAAGCGGAC CGGTTTGACC CGATCGAGAA CGCGCCGGAG GAGTAA
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Protein sequence | MSRRVKRPLA KSRGPGSARP KGARAKAARP KGTRSAGRGV AERFQGERWQ GGRPDKPPRV AAPRDSVPVI EPPAKPEPAP LPTKVQTVAV TADEANMRVD RFLEARFPGL SFSHIQRVVR KGELRVNGKR ADSKDRLGEG DKVRIPPLKL DTPKVAAGLS EAETKIRDEL QKMVLFEDAD VMVLNKPAGL AVQGGSGLSR HIDGMLEVMC DAKGQRPRLV HRLDRETAGC LLVAKTRFAA TALTGSFRHR SARKIYWALV AGVPKPKQGR ISTYLAKEES EEDSIMRIAA HGDEGASHAV TYYAVVETSA QKLAWVSLKP VTGRTHQLRA HMAHIDHAIV GDPKYFNKEN WQLPGGLQKR LHLLARRIVI PHPRGGVIDV TAPLPPHMLQ SWNLLGLEAD RFDPIENAPE E
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