Gene Nham_1562 details

Gene Information

• Locus tag: Nham_1562
• Symbol: rpsE
• ID: 4033136
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrobacter hamburgensis X14
• Kingdom: Bacteria
• Replicon accession: NC_007964
• Strand: +
• Start bp: 1767062
• End bp: 1767634
• Gene Length: 573 bp
• Protein Length: 190 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 637970038
• Product: 30S ribosomal protein S5
• Protein accession: YP_576844
• Protein GI: 92117115
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.205213
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAGGTG AACGCGAACG CGGTGGCGGC CACAGGGGTG GTCGGGAAGA GCGCGATAGC 
GAATTCGTCG ACAAGCTCGT CCACATCAAT CGGGTGGCGA AGGTCGTCAA GGGCGGCAAG 
CGCTTCGGCT TTGCGGCGCT GGTCGTGATC GGCGATCAGA AGGGCCGGGT CGGGTTCGGT 
CACGGCAAGG CGCGCGAAGT TCCGGAAGCG ATCCGCAAGG CGACGGAGTC GGCCAAGCGC 
AATCTGACGC GCGTGGCGCT GCGCGAGGGC CGGACGCTGC ATCACGACAT CGCGGGCCGT 
CACGGCGCCG GCCGGGTTTA CCTGCGCGCC GCGCCGGCCG GCACCGGCAT CATCGCCGGC 
GGCCCGATGC GCGCCGTGTT CGAGACGCTC GGCATCCAGG ACGTGGTGGC GAAGTCGGTC 
GGCTCGTCCA ATCCCTACAA CATGATTCGC GCGACCTTCG ACGCGCTGAA ACATCAGGAT 
TCACCGCGTT CGGTTTCCGC TCGCCGCAAT ATCAAGGTAT CCACGCTGCA ATCGCGCCGT 
GTCGGCGGCG ACGCGGAAGC GGTTGCCGAA TAA 

 

Protein sequence

MAGERERGGG HRGGREERDS EFVDKLVHIN RVAKVVKGGK RFGFAALVVI GDQKGRVGFG 
HGKAREVPEA IRKATESAKR NLTRVALREG RTLHHDIAGR HGAGRVYLRA APAGTGIIAG 
GPMRAVFETL GIQDVVAKSV GSSNPYNMIR ATFDALKHQD SPRSVSARRN IKVSTLQSRR 
VGGDAEAVAE