Gene Nham_1560 details

Gene Information

• Locus tag: Nham_1560
• Symbol: rplF
• ID: 4033134
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrobacter hamburgensis X14
• Kingdom: Bacteria
• Replicon accession: NC_007964
• Strand: +
• Start bp: 1766083
• End bp: 1766616
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637970036
• Product: 50S ribosomal protein L6
• Protein accession: YP_576842
• Protein GI: 92117113
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.269274
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCACGCA TTGGCAAGAG GCCAGTCACG GTGCCGTCCG GTGTGACCGC GACCGTCGAA 
GGGCAGACGG TCAGGATGAA GGGGCCGAAA GGCCAGCTTG AGTTCGTCGT CCATAACGAT 
GTCGAGGTGA AGCTCGAGAA CGGCGCGGTG AAGGTCGCGC CGCGATACGA GACCAACCGG 
GCGCAGGCGC TGTATGGCAC CGCGCGGGCG CAGGTCGCAA ACCTCGTCGC GGGCGTCACC 
AAGGGTTTCG AGAAGAAGCT TGAGATCGTC GGCGTCGGCT ATCGCGCTGC GTTGCAGGGC 
AAGACCTTGC AGCTCGCGCT CGGCTACAGC CACGATGTCA GTTATGCGAT CCCGGAGGGG 
ATCACGATCG CCGTGCCGAA GCCGACCGAA ATCACGATCG CGGGTAATGA TGCGCAGCGC 
GTCGGTCAGG TCGCTGCCGA GATCCGCGGC TATCGTCCGC CGGAGCCCTA CAAGGGCAAG 
GGCGTGAAGT ACGCCGATGA ATTCATCTTC CGCAAGGAAG GCAAGAAGAA GTAA 

 

Protein sequence

MSRIGKRPVT VPSGVTATVE GQTVRMKGPK GQLEFVVHND VEVKLENGAV KVAPRYETNR 
AQALYGTARA QVANLVAGVT KGFEKKLEIV GVGYRAALQG KTLQLALGYS HDVSYAIPEG 
ITIAVPKPTE ITIAGNDAQR VGQVAAEIRG YRPPEPYKGK GVKYADEFIF RKEGKKK