| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1025 |
|---|
| Symbol | |
|---|
| ID | 4032368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 1145739 |
|---|
| End bp | 1148114 |
|---|
| Gene Length | 2376 bp |
|---|
| Protein Length | 791 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637969523 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_576333 |
|---|
| Protein GI | 92116604 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCGCT CTCGCGTCCT TTCGGGCGTC AGCGCGCTGG CGTTGCTCGC TGTTTGCGAC
GATGCTGCCG CACAGACCGC CGTCCAGACA CTGCCAGGCA TTACGGTCGA AGCCCCGCGC
CCTGCCCAAG CCAGTCCGCG CAAAAAGCGA ACGGTCGCGC GCCGCACCGC TCCGAGACCG
TCACAGCCGC GGCCGACCGT GGCGGCAAAG CCATCGCCCG TATCCATCGA TTCGAACCTT
GCGATCCTTT ACCAGGCGCC GGGCGGGCAG ACCCAAACAT CCATTGGCCG CGATCAATTT
GACAACCGGC CGTCTTTCTC CGTGGCCGAC GTGTTGCGCG ACAGCCCGGG CATCTCCGTC
AAACAAGGGA ACGGACCTCG GGACTTCGGC ATCTCGATTC GCGGATCGAA CGCGCGAAAC
GGCTATGGCA TTCGCAACCT GGTGATCTTT GACGACGGCT TCCCGGTCAC CCAGCCTGAC
GGATTGTCCC GCAGCGACCT AATCGATCCT CGTGCCTACG GGGCCATCGA CGTCATCCGG
GGTCCGTCTT CAGCGCTTTA CGGCAATTAC GCGACCGGCG GCGCGCTGAA CTTCAGGACC
CGTCGTGGCG CCGAGATCAA CGGAATAGAG TACGGTCTCG ATGCCGGAAG CTACGGCTAC
CTCAACAACT ATCTGACCGC CGGCAAGAAG ATCGGAAACT TCGAGGCTTC GCTGTTCGCG
AGCGACGTGC GCGGCGACGG CTATTTCGGC AATAGCTGGT TCAATACCCA GACCGTGAAC
TTCCTGGGGA CGCTGCAGGC GACGCCGGAC GATCGTTTCA CCTTCAAGCT GATCAACAAC
ATGCTGGATG CGCGCATCCC GATCCGGTCC TCGCTCAATC AATTCGACAC CAACCCTTTC
CAGCGCGGCT GTGCGACGGC CGCGACGGCC GCTCCCGGCT GCGGCACGGT CACGCTGTTC
AACAACGGCT TCAACGCGAC CGCCGGGACC GACCGCGAAA CGGCCGAGCA GGCCGGGCTC
GGCCGCACCG ATCGCCGGAC CATTGTCGGC GGCCGCTGGG AACACGATTT CGACAACCAG
ACCACCTGGC GCAACCAGTT CGTGTTCGAC GATCGCAATA TCAACCAGCC GACCGGCACC
ACGAGCGCGA TCGGCGATTA TCCGTCCTAT AATTTCATGA GCGACGTCGT CAGGCGGAGC
CAGTTGCTTG GCATGGACGC GACCAGCTAT GTCGGCGTGT TCTACAACAC TCTGAACTGG
TCCGGTGACA CGCGTAACGT GATGCCCGGG GGGAACGCCA CGCTCGGCCG GCTATCGTCG
AATATCACCG GCGAACACAC CAATTACGGT GTCCGCGCGC GCGAAGAACT CAGGCTTACC
GATTCATGGA CGGCCATCGC CGGTATCGGG TGGGAGACGA CGCATCTAAA GGGCATCAAT
ACAGCTTACG CCTATGCCGG ACCAACGGGA ATCGCGACCA CGGCGATCAA AAGCGCGGAC
CGCCAATTCC AGAACACCGC GCCGGAATTC GCGCTGCAAT ACCGCGCGAA CAAGGACTGG
CTCTTCCATG CGCGGGTCGC GACCGGCTAC GGGACGCCAC AGGTCGGAAA CCTGTTCGTG
CTGCCAAATG GCCAGAACGG CAACAACACG CAGCTCAATC CCCAAAAGAA CCTCGGTTAC
GATCTCGGCT TTGACTGGAC ACCGGATCCC ACGCTCAGGG TGAGCGCGAC CGGCTTCTAC
GAGTTCTTCC GCGATGAACT GGTCACACAG GCAACGCCCC TCGGCGCGCC CAATTCGAGC
TACACGTTCA ATGCCCCGAA ATCCGAGCAC CGGGGCGTCG AGCTGTTGGC GGACTGGCGC
TTCCTGCCAA ACTGGCGGGT GACAGCCGCT TATACTTATC TCGACGAGAT TTACACCAGC
TACACCGAGA ATATCAACAA TGGCGCCACT TTCGGCTTCA ATCGGGCGGG CAACAAAATT
CCCGGCGTAT CGCCGAACGA ACTGACGGCG CGGCTTTCCT ATGACCAACT CTCTGGATCC
TTGAAAGGCG TCGGTGCATT CGTCGAGTTC CAGTGGAAGG ACGCATTCTA CATGGACAAC
GCCAATCTCC TGAAGGCTCC CGGCTACGAT CTGGTCAACC TCAACCTGCA CTACGACAGG
CCCCTGCAAT CGGACTACCT GAAGTCGCTT CATCTTTTCT TCGAAGTGCG GAACGTCTTC
GACAAGACAT ATGTGGCATC CGCCAACAAT ATCGCGAATT CGGTAACCGG CGCGGGCATT
CAAAACCCCG CGAGCATCCT GGCCAATACC GGCGGCTCCA TCTATGCCGG GTCGCCGCGC
ACGTTCATCG CCGGAATGAG GCTTGCGTTT CGATAG
|
|---|
| Protein sequence | MFRSRVLSGV SALALLAVCD DAAAQTAVQT LPGITVEAPR PAQASPRKKR TVARRTAPRP
SQPRPTVAAK PSPVSIDSNL AILYQAPGGQ TQTSIGRDQF DNRPSFSVAD VLRDSPGISV
KQGNGPRDFG ISIRGSNARN GYGIRNLVIF DDGFPVTQPD GLSRSDLIDP RAYGAIDVIR
GPSSALYGNY ATGGALNFRT RRGAEINGIE YGLDAGSYGY LNNYLTAGKK IGNFEASLFA
SDVRGDGYFG NSWFNTQTVN FLGTLQATPD DRFTFKLINN MLDARIPIRS SLNQFDTNPF
QRGCATAATA APGCGTVTLF NNGFNATAGT DRETAEQAGL GRTDRRTIVG GRWEHDFDNQ
TTWRNQFVFD DRNINQPTGT TSAIGDYPSY NFMSDVVRRS QLLGMDATSY VGVFYNTLNW
SGDTRNVMPG GNATLGRLSS NITGEHTNYG VRAREELRLT DSWTAIAGIG WETTHLKGIN
TAYAYAGPTG IATTAIKSAD RQFQNTAPEF ALQYRANKDW LFHARVATGY GTPQVGNLFV
LPNGQNGNNT QLNPQKNLGY DLGFDWTPDP TLRVSATGFY EFFRDELVTQ ATPLGAPNSS
YTFNAPKSEH RGVELLADWR FLPNWRVTAA YTYLDEIYTS YTENINNGAT FGFNRAGNKI
PGVSPNELTA RLSYDQLSGS LKGVGAFVEF QWKDAFYMDN ANLLKAPGYD LVNLNLHYDR
PLQSDYLKSL HLFFEVRNVF DKTYVASANN IANSVTGAGI QNPASILANT GGSIYAGSPR
TFIAGMRLAF R
|
|---|
| |