Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nham_0906 |
Symbol | |
ID | 4031340 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrobacter hamburgensis X14 |
Kingdom | Bacteria |
Replicon accession | NC_007964 |
Strand | - |
Start bp | 999430 |
End bp | 1000779 |
Gene Length | 1350 bp |
Protein Length | 449 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637969415 |
Product | secretion protein HlyD |
Protein accession | YP_576225 |
Protein GI | 92116496 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.101628 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTTTCC TTGTGGCAGG TGTGCTATGT GCATTAATTC TCGGGCTCGG CTACACCTAT AGCCAGGAGA ATCCGGCGCC GACGTATCTC ATCGCACCCG TAGAACGCGG CAACATCTCA ACTCTCGTAA AGGCCAGCGG CACTGTCGAG CCGGTCGTAA GCGTTGATGT CAGCTCGCAA TTGTCAGGGC GAATTGCGGA GGTGTTCGTT AGCTTCAACG ATAGCGTCAC GGCCGGGCAG CCGATTGCAC AAGTCGATCA AGAGATCTTT GCCGCCCGCG TCAATGAAGC CAGAGCCGCT CTGAGAGTGG CGAAAGCTAC TGCCCAAGTG CAAAGAGCGG CGCTGAAACG AGCGAATGTT GCAATGACGA ATGCGAAGAC TGCTGAAACA TTGGCGAAGG ACCAATCGGC CGCTAACGAA GCCAGACAAG GCGAAGCCGA AAGGGAGTTT TCGCGAAAAT TAGCATTGGC GCGCACCGGC AGCGGAACTG AGCGAGACCT AAGCCAGGCG CGGGCTCTGC GCGACGCGGG GGCTGCCGAC CTGCGCGCTT CCCTTGAGCA GATCCAGATG AAGGCCGAGG CCATTGCGAT TGCGGAAGCA GAAAAGCACA TGGCCGAGGC CAATCTCGAG AATGCAGACG CTGTTGTCGA GCAGAGGCAG GCGACCGTCG ATCAGGCGGA ACTTGATCTT GATCGTACCG TGCTCCGTGC GCCGATTGAT GGAATCATCA TCAAGCGGGA TGTCAATCCG GGACAAACGG TCGCCGTCAG TCTCGAAGCC AAAACATTGT TCAAGATCGC GAACGATCTG CGTGAGATGG AGGTCCACGG CAAGATCGAC GAGGCCGACG TCGGACAGTT GAAAGTGGGC CAGACGGCCC GGTTCTCGGT GGACGCTTAT CCGGACCGCA CCTTCAGCGG ACAGGTTCTC CAGATCCGCA AGTCTCCTGA AGTCCTACAA AACGTCGTCA CCTATACGGC AATCGTGTCC GCGCCAAATT CGGACCTCCT GTTGCTGCCG GGAATGACCG CCCAGCTTCG AATTGTGGTG AGTGATACCC GCGGGGTCCT CAAAATTCCC AGCCAAGCGC TGCGCTTCCG GCCGAACGAT GCCGGTCTTC CGTCTGGTCA CCAGGATGCG ACTCAGGCCG CCTCCTCCCA GACCTCCGCG ACGGTATGGC TGGTCGGCGA CGGGGGGCGA CCAAAGCCGG TCGCAGTGAG ACTGGGTGTG AGCGACGACA ACAGCGCAGA ACTGCTAGAG GGCGCGCTTG CGGAGGACCA GCAAGTGATC GTCGGGACTG CGAACTCCCA AAAGCAGAGG AGCTATTTCG GCTTGCGCCT TGGATTTTGA
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Protein sequence | MRFLVAGVLC ALILGLGYTY SQENPAPTYL IAPVERGNIS TLVKASGTVE PVVSVDVSSQ LSGRIAEVFV SFNDSVTAGQ PIAQVDQEIF AARVNEARAA LRVAKATAQV QRAALKRANV AMTNAKTAET LAKDQSAANE ARQGEAEREF SRKLALARTG SGTERDLSQA RALRDAGAAD LRASLEQIQM KAEAIAIAEA EKHMAEANLE NADAVVEQRQ ATVDQAELDL DRTVLRAPID GIIIKRDVNP GQTVAVSLEA KTLFKIANDL REMEVHGKID EADVGQLKVG QTARFSVDAY PDRTFSGQVL QIRKSPEVLQ NVVTYTAIVS APNSDLLLLP GMTAQLRIVV SDTRGVLKIP SQALRFRPND AGLPSGHQDA TQAASSQTSA TVWLVGDGGR PKPVAVRLGV SDDNSAELLE GALAEDQQVI VGTANSQKQR SYFGLRLGF
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