Gene Nham_0906 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_0906 
Symbol 
ID4031340 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp999430 
End bp1000779 
Gene Length1350 bp 
Protein Length449 aa 
Translation table11 
GC content59% 
IMG OID637969415 
Productsecretion protein HlyD 
Protein accessionYP_576225 
Protein GI92116496 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.101628 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTTTCC TTGTGGCAGG TGTGCTATGT GCATTAATTC TCGGGCTCGG CTACACCTAT 
AGCCAGGAGA ATCCGGCGCC GACGTATCTC ATCGCACCCG TAGAACGCGG CAACATCTCA
ACTCTCGTAA AGGCCAGCGG CACTGTCGAG CCGGTCGTAA GCGTTGATGT CAGCTCGCAA
TTGTCAGGGC GAATTGCGGA GGTGTTCGTT AGCTTCAACG ATAGCGTCAC GGCCGGGCAG
CCGATTGCAC AAGTCGATCA AGAGATCTTT GCCGCCCGCG TCAATGAAGC CAGAGCCGCT
CTGAGAGTGG CGAAAGCTAC TGCCCAAGTG CAAAGAGCGG CGCTGAAACG AGCGAATGTT
GCAATGACGA ATGCGAAGAC TGCTGAAACA TTGGCGAAGG ACCAATCGGC CGCTAACGAA
GCCAGACAAG GCGAAGCCGA AAGGGAGTTT TCGCGAAAAT TAGCATTGGC GCGCACCGGC
AGCGGAACTG AGCGAGACCT AAGCCAGGCG CGGGCTCTGC GCGACGCGGG GGCTGCCGAC
CTGCGCGCTT CCCTTGAGCA GATCCAGATG AAGGCCGAGG CCATTGCGAT TGCGGAAGCA
GAAAAGCACA TGGCCGAGGC CAATCTCGAG AATGCAGACG CTGTTGTCGA GCAGAGGCAG
GCGACCGTCG ATCAGGCGGA ACTTGATCTT GATCGTACCG TGCTCCGTGC GCCGATTGAT
GGAATCATCA TCAAGCGGGA TGTCAATCCG GGACAAACGG TCGCCGTCAG TCTCGAAGCC
AAAACATTGT TCAAGATCGC GAACGATCTG CGTGAGATGG AGGTCCACGG CAAGATCGAC
GAGGCCGACG TCGGACAGTT GAAAGTGGGC CAGACGGCCC GGTTCTCGGT GGACGCTTAT
CCGGACCGCA CCTTCAGCGG ACAGGTTCTC CAGATCCGCA AGTCTCCTGA AGTCCTACAA
AACGTCGTCA CCTATACGGC AATCGTGTCC GCGCCAAATT CGGACCTCCT GTTGCTGCCG
GGAATGACCG CCCAGCTTCG AATTGTGGTG AGTGATACCC GCGGGGTCCT CAAAATTCCC
AGCCAAGCGC TGCGCTTCCG GCCGAACGAT GCCGGTCTTC CGTCTGGTCA CCAGGATGCG
ACTCAGGCCG CCTCCTCCCA GACCTCCGCG ACGGTATGGC TGGTCGGCGA CGGGGGGCGA
CCAAAGCCGG TCGCAGTGAG ACTGGGTGTG AGCGACGACA ACAGCGCAGA ACTGCTAGAG
GGCGCGCTTG CGGAGGACCA GCAAGTGATC GTCGGGACTG CGAACTCCCA AAAGCAGAGG
AGCTATTTCG GCTTGCGCCT TGGATTTTGA
 
Protein sequence
MRFLVAGVLC ALILGLGYTY SQENPAPTYL IAPVERGNIS TLVKASGTVE PVVSVDVSSQ 
LSGRIAEVFV SFNDSVTAGQ PIAQVDQEIF AARVNEARAA LRVAKATAQV QRAALKRANV
AMTNAKTAET LAKDQSAANE ARQGEAEREF SRKLALARTG SGTERDLSQA RALRDAGAAD
LRASLEQIQM KAEAIAIAEA EKHMAEANLE NADAVVEQRQ ATVDQAELDL DRTVLRAPID
GIIIKRDVNP GQTVAVSLEA KTLFKIANDL REMEVHGKID EADVGQLKVG QTARFSVDAY
PDRTFSGQVL QIRKSPEVLQ NVVTYTAIVS APNSDLLLLP GMTAQLRIVV SDTRGVLKIP
SQALRFRPND AGLPSGHQDA TQAASSQTSA TVWLVGDGGR PKPVAVRLGV SDDNSAELLE
GALAEDQQVI VGTANSQKQR SYFGLRLGF