| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_0742 |
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| Symbol | |
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| ID | 4031502 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 819160 |
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| End bp | 821481 |
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| Gene Length | 2322 bp |
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| Protein Length | 773 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637969274 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_576085 |
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| Protein GI | 92116356 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCGGCG TTTGCGCTAT CGCGTTGGCA CTTTGCATTA TCAATCTTCT GACGTCCTGC
AACGTTGCGA CGACCGGCTC CACGGCACCC GGCGATATCG ACGTGCTTGA CAAGGTCCGC
TCGCTCGACA TCATGCCGCG CCAGGCGCAA GGCGTGAATT CAGCGCCGCA AAATGTTGGC
GAGCGAGGCC GAGCCGCGGT ATTCGAAGGC ACCGAAATCA CCGATGCCGC GGAAGCGCGG
CCGCAGCCGG CGGCGAGCGG CAGCGCTGGC GGCGGTTATG ACCTCAATTT CGAGAACACA
CCGATCCCCA CCGTCGCGAA GGTCATGATC GGCGACATTC TCAATGAAGG CTACGTCATC
GATCCGCGGG TACAGGGTAC GATTAGTCTG GTGTCGGTGC GGCCGGTACC GAAGTCCGAT
ATCGCGTTTG TTCTTGAAAA TGCATTGCGG CTTTCCGGTG TTGCGCTGTT GCGCGACAAC
GCCGGCTATC GCGTGACCCC GCGTAGCGAG GCGCTGGGGG CGGGTCGGGT GGAGTCTGCA
ACGGCAACGG AGCCGGGCTA CGGCGTTTCC GTCGTGCCTC TGCAATATGT TTCGGCGCAG
ACTGTGATGA AGCTGATGGA TTCCTTTGTA ACCAAGCCAG GCAGCGTGCG TGCTGACGCG
ACTCACAACC TGCTTCTGAT TCAGGGCACT GGCTCTGAGC GGCGCGCCGC GGTCGACACC
GCCATGAGCT TCGACGTCGA CTGGATGCGC GGCCAGTCGG TCGGCGTCTA TCCGCTTGGC
AACAGCGCGC CGGAGCCGAT CATTACCGAA CTGGAAAAGA TCATGGATTC CGGCGACAGT
GGCCTCAGCC ACAGCGTGGT GAAATTCCAA CCGGTGAGTC GGCTCAACGC CATTCTTGTC
GTCAGCCGCA AGCCGGCATT GCTGCATACT GCCGCGACCT GGATCCGGCG GCTCGACCAC
GCCGATACCA CGCGCACCAG CGTGCATGTC TACCGGGTGA AATATGGCGA GGCGAAGCAG
ATCGCGCGCA TCCTCACCGA GATGTTCATC GGCGGATCGT CGTCCTCGCT CGACAGTGCC
GACAATCAGC TTGCGCCGGG GTCGGGCTCG TCCCTGACCT CCGGCGTCGA CAGGCTGTCG
GGGAACACGA ATTCGCCATC GGCAGCCGGC GGTTCTGGAT CGCGCCCGCC ATCCGGAATG
GGCGGGGCCG GCGGCGGGTT TTCGAAGGTT AGTCAGCAGA CGACGGCCAG TGGTGGCGCC
GGGGCCGGCA CGAATACGCC CACAGGGGGC GGCGCGCTCG ACAGCAACAG CGGCGGCAAT
GGGCAGCCGC TGATGCAGGG CGTGCGCATC ACTCCCGACG TCGTCAACAA CACACTGCTG
ATCTACGCCG ATCAGGCCAA CTACAAGATC ATCCAGGCCA CGCTGCAGCA GGTCGATCAG
CCGCAGTTGC AAGTGGCGAT CGACGCGACG ATCGCCGAGG TGACGCTCAC CAACGAGCTG
AGCTACGGCG TGCAGTCCTA TCTGACCAGC AAGAACCTCG GCATGAAGGC GAACCAGGGT
TCGCTCCTCA ACACGCAGTC CAATGCTGCG CCGATACCGA CGTCGGCCGG AACGACCGAT
CTGGCCGGGG CGGCGGGTTC GGTGGCCAAC GCCTTCATCA ACCGCGCCTT GCCGGGATTC
AATTTCCTGA TCGGCTCGGA GGCGCAGCCG GCCGTCATTC TCGACGCCCT GCATGCGGTC
ACCAGCGTCA AGGTGCTGTC GAACCCTTCG CTGGTCGTGA TCAACAACCA AACGGCGACG
TTGCAGGTCG GCGACACGGT GCCGGTCTCG ACCGGCACCG CAACGGTTCT GAACGGTAAC
AACAACGTGG TCAACAGCAT CGACTATCGC AACACCGGCA TCATCCTGCG TGTCTCGCCG
CGCATCAATG TCAACGGCAA TGTCCGGCTT GAGGTCGAGC AGGAAATCAG CAGCGTGCAA
CCAACCGCCA GTTCCACGCT GACACCGACC GTGGCAGAGC GACGGGTGAA AAGCTCGATC
TCGGTTGCCA GCGGTCAGAC CGTGCTGCTG GCCGGGCTGA TCAGCGAGCA GCAGAACGGC
GGGCGCAGCG GCATCCCGCT GCTTGACGAA ATCCGGGGGC TGGGCGACGC CTTCGCGCAC
CAGGGCAAGA GAGGCACCCG CACCGAATTG ATCATCTTCA TTCGTCCGCA GATCATCCGC
GACGGCACCG ACGCACATCA CGTCGCCGAG GAGTTGCGGT CGAAATTGCG CGGCAGCGTG
GGAGCGAGCA TCGATGACCT GCGGGTTCGC ACCGTCCACT GA
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| Protein sequence | MRGVCAIALA LCIINLLTSC NVATTGSTAP GDIDVLDKVR SLDIMPRQAQ GVNSAPQNVG
ERGRAAVFEG TEITDAAEAR PQPAASGSAG GGYDLNFENT PIPTVAKVMI GDILNEGYVI
DPRVQGTISL VSVRPVPKSD IAFVLENALR LSGVALLRDN AGYRVTPRSE ALGAGRVESA
TATEPGYGVS VVPLQYVSAQ TVMKLMDSFV TKPGSVRADA THNLLLIQGT GSERRAAVDT
AMSFDVDWMR GQSVGVYPLG NSAPEPIITE LEKIMDSGDS GLSHSVVKFQ PVSRLNAILV
VSRKPALLHT AATWIRRLDH ADTTRTSVHV YRVKYGEAKQ IARILTEMFI GGSSSSLDSA
DNQLAPGSGS SLTSGVDRLS GNTNSPSAAG GSGSRPPSGM GGAGGGFSKV SQQTTASGGA
GAGTNTPTGG GALDSNSGGN GQPLMQGVRI TPDVVNNTLL IYADQANYKI IQATLQQVDQ
PQLQVAIDAT IAEVTLTNEL SYGVQSYLTS KNLGMKANQG SLLNTQSNAA PIPTSAGTTD
LAGAAGSVAN AFINRALPGF NFLIGSEAQP AVILDALHAV TSVKVLSNPS LVVINNQTAT
LQVGDTVPVS TGTATVLNGN NNVVNSIDYR NTGIILRVSP RINVNGNVRL EVEQEISSVQ
PTASSTLTPT VAERRVKSSI SVASGQTVLL AGLISEQQNG GRSGIPLLDE IRGLGDAFAH
QGKRGTRTEL IIFIRPQIIR DGTDAHHVAE ELRSKLRGSV GASIDDLRVR TVH
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