Gene Nham_0547 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_0547 
Symbol 
ID4030839 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand- 
Start bp605686 
End bp606222 
Gene Length537 bp 
Protein Length178 aa 
Translation table11 
GC content68% 
IMG OID637969077 
Product2',5' RNA ligase 
Protein accessionYP_575897 
Protein GI92116168 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0451393 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGCGTT TGTTCACCGG GCTGGAAATA CCGCCCGATA TCGGCCGCAC GCTGTCGAGT 
TTGCGGGGCG GCCTGCCGGG CGCCCGCTGG ATCGATCCCG AAAACTACCA CCTCACGCTC 
CGCTTCATCG GCGATATCGA CGGCGCGTCC GCCAACGAGA TCGCGTCGAT GCTGTTCCGG 
GTCAACCGCA AGCCGTTCGA GGTGACGCTG CGGGGCCTGT CGAGTTTCGG CGGCAAGAAA 
CCGCGCGCCG TCGTCGCCTC GGTGGAGCCG AGCGGCCCGC TGGTCGAATT GCAGGGCGAA 
CTCGAACGGC TGATGCGGCG CTGCGGACTC GATCCCGAGG GCCGCAAGTT CACGCCCCAC 
GTCACGCTGG CGCGCTTGCG CGATGCGTCC AACCAGGACG TCGCGGATTA TCTGTCGGTG 
CGCGGCTATT TCCCGGCCCG GGCGTTCACC GCCGAGCGCT TCGTGCTGTT CTCCTCGCGC 
GCGTCGGTCG GCGGCGGCCC CTACGTGGTG GAGGACTCCT ACGCGCTCAG CGCGTGA
 
Protein sequence
MPRLFTGLEI PPDIGRTLSS LRGGLPGARW IDPENYHLTL RFIGDIDGAS ANEIASMLFR 
VNRKPFEVTL RGLSSFGGKK PRAVVASVEP SGPLVELQGE LERLMRRCGL DPEGRKFTPH 
VTLARLRDAS NQDVADYLSV RGYFPARAFT AERFVLFSSR ASVGGGPYVV EDSYALSA